View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11660_low_29 (Length: 325)
Name: NF11660_low_29
Description: NF11660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11660_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 20 - 201
Target Start/End: Original strand, 28249251 - 28249431
Alignment:
| Q |
20 |
caatcccaataatctcaatcattcacaacttatcttcctaattcctccgaagtcacttagcaaatttcggagaaaaaattgcacagacattacacac--- |
116 |
Q |
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| T |
28249251 |
caatctcaataatctcaatcattcacaacttatcttcctaattcctccgaagtcac-tagcaaatttcggggaaaaaattgtaaagacattacacacatt |
28249349 |
T |
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| Q |
117 |
attattatatgacaggacnnnnnnntttgtttagtccaagcttggacgttgaattccaatacttgacttggaagaaatttgacaa |
201 |
Q |
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| T |
28249350 |
attattatatgagaggacaaaaaa---tgtttagtctaagcttggacgttgaattccaatacttgacttggaagaaatttgacaa |
28249431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 231 - 315
Target Start/End: Original strand, 28249495 - 28249579
Alignment:
| Q |
231 |
tagtttgatcattcgtctctactctctagaatcacttatattcaagaaaacgattcgttcaaacagccatcattcttgttctctg |
315 |
Q |
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| T |
28249495 |
tagtttgatcattcgtctcaactctccagactcacttatattcaagaaaacgattcgttcaaacagccatcactcttgttgtctg |
28249579 |
T |
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