View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11660_low_3 (Length: 669)

Name: NF11660_low_3
Description: NF11660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11660_low_3
NF11660_low_3
[»] chr4 (1 HSPs)
chr4 (1-655)||(52126707-52127362)


Alignment Details
Target: chr4 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 1 - 655
Target Start/End: Original strand, 52126707 - 52127362
Alignment:
Q  1 atgttgacatccaagacactagcgacgccatttttcagttggtgatgttctgactaaagaaaacttcgaatttctgaaaattgatcactccatccatcct 100  Q
    ||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||| ||||    
T  52126707 atgttgacatccaagacactagcaacaccatttttcagttggtgacgttctgactaaagaaaacttcgaatttctaaaaattaatcactccatccgtcct 52126806  T
Q  101 taggtataagacnnnnnnnataatctctctctaaacataaaatcctctaccaatttcaagagccatttattgattttgttaaaatannnnnnnatgtgaa 200  Q
    ||||||||||||       |||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||       |||||||    
T  52126807 taggtataagactttttt-ataaactgtctctaaacataaaatcctctaccaatttcaagagtcatttattgattttgttaaaataattttttatgtgaa 52126905  T
Q  201 ttaattatttctgcatttatgcgcaattaaa-gattaatc-tttgagtcgggtattattacaagaatgaaaagaaaatgagtgaaaggaaggaagcaaca 298  Q
    ||||||||||||| ||||||| ||||||||| |||||||| |||||||||| ||||  | |||||| |||||||||||||||||||||||||||||||||    
T  52126906 ttaattatttctgtatttatgtgcaattaaaagattaatcctttgagtcggttatttctgcaagaaagaaaagaaaatgagtgaaaggaaggaagcaaca 52127005  T
Q  299 caacacagccagtcccacatcttgacttttggtactataatctcacccgattcgtattcatgaaacaatctcattatttcggtgtttcccaagaaaccct 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52127006 caacacagccagtcccacatcttgacttttggtactataatctcacccgattcgtattcatgaaacaatctcattatttcggtgtttcccaagaaaccct 52127105  T
Q  399 ccaattcatttcaatttccgcttaattcaaacgcgcttaattcttcttcgaatctctgcacaaacaaatggtttcgtacatgaacattctactctacggc 498  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52127106 ccaattcatttcaatttccgcttaatccaaacgcgcttaattcttcttcgaatctctgcacaaacaaatggtttcgtacatgaacattctactctacggc 52127205  T
Q  499 gtcggaggcttagtcgtcgccggcatggcattgctcgtcgcgtttcaggagaagcttgtttacgttccggtcttaccaggtctcaccaaatcctacgcta 598  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52127206 gtcggaggcttagtcgtcgccggcatggcattgctcgtcgcgtttcaggagaagcttgtttacgttccggtcttaccaggtctcaccaaatcctacgcta 52127305  T
Q  599 tcactccttctcgtctcagactcacctatgaagatatctggctttcttcttctgatg 655  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52127306 tcactccttctcgtctcagactcacctatgaagatatctggctttcttcttctgatg 52127362  T

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