View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11660_low_30 (Length: 317)
Name: NF11660_low_30
Description: NF11660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11660_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 23874272 - 23873978
Alignment:
| Q |
1 |
agtaatagactataaagttttgatatatgttttcattatgtgaaaatacaatgatttcagatattagtctcaataaaaaagcataaactagtaggaataa |
100 |
Q |
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| T |
23874272 |
agtaatatactataaggttt-gatatatgttttcattttgtgaaaatacattgatttcagatattagtctgaataaaaaagcataaacttgtaggaataa |
23874174 |
T |
|
| Q |
101 |
atttgaatttcatttgtgtagtgatggttttgcagaatatatctgaaggtagagactcaagtgctatggtgnnnnnnngtgggagtgagcctgcaccaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
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| T |
23874173 |
atttgaatttcatttgtgtagtgatggttttgcagaatatatctgaaggtagggactcaagtgctatggtgaaaaaaagtgggagtgagcctgcaccaaa |
23874074 |
T |
|
| Q |
201 |
aaggtccaaaaatgaaaccccatcacctttgccagcttttaaggtacaataaatgcaactaaccttttaacaacaaagggaagctaactagcttta |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
23874073 |
aaggtccaaaaatgaaaccccatcacctttgccagcttttaaggtacaataaatgcaactaaccttttaacaacaaagggaagctagctagcttta |
23873978 |
T |
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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 179 - 273
Target Start/End: Complemental strand, 34349384 - 34349290
Alignment:
| Q |
179 |
gtgggagtgagcctgcaccaaaaaggtccaaaaatgaaaccccatcacctttgccagcttttaaggtacaataaatgcaactaaccttttaacaa |
273 |
Q |
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||||||||||||| ||||| |||||| || || |||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
34349384 |
gtgggagtgagccagcacccaaaaggacccgtaacgaaaccccatcaactttgccagcttttaaggtacaataagtgcaactgaccttttaacaa |
34349290 |
T |
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