View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11660_low_31 (Length: 314)
Name: NF11660_low_31
Description: NF11660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11660_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 7290181 - 7289884
Alignment:
| Q |
1 |
gaatattaataaaaggagaaaaataactgatatctgctagaaaatccattgctttaatattcaaatagagaattttaagttgttgtttgtattaaactac |
100 |
Q |
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| T |
7290181 |
gaatattaataaaaggagaaaaataactgatagctgctagaaaatccattgctttaatactcaaatagagaattttaagttgttgtttgtattaaactac |
7290082 |
T |
|
| Q |
101 |
aaacatataagattcataatataagaaatataaaagtacacatcagataactaacatggaagcaatcaacatttcattaataaagtataaaatatttatg |
200 |
Q |
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| T |
7290081 |
caccatataggattcataatataagaaatataaaagtacacatcagataactaacatggaagcaatcaacatttcattaataaagtataaaatatttatg |
7289982 |
T |
|
| Q |
201 |
ctttttgccataattgtcatgaaataaaatgcaaagttgcccataatacagtggatgccgaaagcacaattttgaactattgtaaggtatcaaaatag |
298 |
Q |
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| T |
7289981 |
ctttttgccataattgtcatgtaataaaatgcaaagttgcccataatacagtggatgccggaagcacaatttcaaactattttaaggtatcaaaatag |
7289884 |
T |
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Back To:
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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 34452450 - 34452393
Alignment:
| Q |
11 |
aaaaggagaaaaataactgatatctgctagaaaatcc--attgctttaatattcaaat |
66 |
Q |
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||||||||| |||||||||||| |||||||||||||| |||||||||||| |||||| |
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| T |
34452450 |
aaaaggagagaaataactgatagctgctagaaaatccatattgctttaatactcaaat |
34452393 |
T |
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