View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11660_low_33 (Length: 310)

Name: NF11660_low_33
Description: NF11660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11660_low_33
NF11660_low_33
[»] chr3 (5 HSPs)
chr3 (12-291)||(8332966-8333245)
chr3 (85-231)||(8341950-8342096)
chr3 (12-77)||(8341410-8341479)
chr3 (228-283)||(8333268-8333323)
chr3 (90-143)||(26727551-26727604)
[»] chr2 (4 HSPs)
chr2 (88-193)||(29228544-29228649)
chr2 (88-193)||(29341843-29341948)
chr2 (12-65)||(29229172-29229227)
chr2 (12-65)||(29342472-29342527)
[»] scaffold0061 (1 HSPs)
scaffold0061 (88-196)||(29808-29916)
[»] scaffold0017 (2 HSPs)
scaffold0017 (88-196)||(168876-168984)
scaffold0017 (158-206)||(173955-174003)
[»] chr1 (4 HSPs)
chr1 (88-194)||(44144872-44144978)
chr1 (92-206)||(44612085-44612199)
chr1 (91-143)||(44785757-44785809)
chr1 (94-206)||(11544676-11544788)
[»] chr5 (9 HSPs)
chr5 (103-196)||(29507531-29507624)
chr5 (103-143)||(29507656-29507696)
chr5 (103-143)||(29507728-29507768)
chr5 (103-141)||(29507874-29507912)
chr5 (103-141)||(29507946-29507984)
chr5 (103-141)||(29508090-29508128)
chr5 (106-144)||(29508159-29508197)
chr5 (103-143)||(29507800-29507840)
chr5 (103-143)||(29508016-29508056)


Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 12 - 291
Target Start/End: Original strand, 8332966 - 8333245
Alignment:
Q  12 aagaaggaagcaggaaaatacacattccttaaacacaattttctatatgtgtgtatgtttgtataactcttaagaggggaagattcctactcaacttggg 111  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||    
T  8332966 aagaaggaagcaggaaaatacaccttccttaaacacaattttctatatgtgtgt--gtttgtataactcttaagagggaaagattcctactcaacttggg 8333063  T
Q  112 aatctctcacaattgcaacaccttaatctcagacttgatgatcttgttggagaaatccctttccaactcgaaaatctttcattgtagc--aatctctcat 209  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||    
T  8333064 aatctctcacaattgcaacaccttaatctcagacttaatgatcttgttggaaaaatccctttccaactcgaaaatctttcattgtagcaaaatctctcat 8333163  T
Q  210 gcttggttacaactttgatcttccaaacttctacttaaacaacaaacaaaattatggaaatgctatatgtaatttatatata 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||| |||||    
T  8333164 gcttggttacaactttgatcttccaaacttctacttaaacaacaaacgaaattatggaaataatatatgtaatttacatata 8333245  T

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Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 85 - 231
Target Start/End: Original strand, 8341950 - 8342096
Alignment:
Q  85 gaggggaagattcctactcaacttgggaatctctcacaattgcaacaccttaatctcagacttgatgatcttgttggagaaatccctttccaactcgaaa 184  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||   ||||||||||||||||| ||    
T  8341950 gagggaaagattcctactcaacttgggaatctctcacaattgcaacaccttaatctcagtcttaatgatcttgttggtacaatccctttccaactcggaa 8342049  T
Q  185 atctttcattgtagcaatctctcatgcttggttacaactttgatctt 231  Q
    ||||||| || | ||||||||| |||||||||||||| | |||||||    
T  8342050 atctttcgttattgcaatctctgatgcttggttacaattctgatctt 8342096  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 8341410 - 8341479
Alignment:
Q  12 aagaaggaagcaggaaaatacacattccttaaacacaattttc----tatatgtgtgtatgtttgtataa 77  Q
    ||||||||||||||||||||||| |||||||||||||||||||    ||||||||||| |||||||||||    
T  8341410 aagaaggaagcaggaaaatacaccttccttaaacacaattttctatatatatgtgtgtgtgtttgtataa 8341479  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 228 - 283
Target Start/End: Complemental strand, 8333323 - 8333268
Alignment:
Q  228 tcttccaaacttctacttaaacaacaaacaaaattatggaaatgctatatgtaatt 283  Q
    ||||||||||||||||||||||||||||| |||||||||||||  |||||||||||    
T  8333323 tcttccaaacttctacttaaacaacaaacgaaattatggaaataatatatgtaatt 8333268  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 143
Target Start/End: Original strand, 26727551 - 26727604
Alignment:
Q  90 gaagattcctactcaacttgggaatctctcacaattgcaacaccttaatctcag 143  Q
    |||||||||| |||||||||| || |||||||| |||||||||||| |||||||    
T  26727551 gaagattccttctcaacttggaaaactctcacagttgcaacaccttgatctcag 26727604  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 88 - 193
Target Start/End: Complemental strand, 29228649 - 29228544
Alignment:
Q  88 gggaagattcctactcaacttgggaatctctcacaattgcaacaccttaatctcagacttgatgatcttgttggagaaatccctttccaactcgaaaatc 187  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||| |||| ||     |||| ||  |||||| ||||||||||||||||| |||||    
T  29228649 gggaagattccttctcaacttggaaatctctcacaattgcaacaccttgatcttagcaacaatgaactcattggagcaatccctttccaactcggaaatc 29228550  T
Q  188 tttcat 193  Q
    ||||||    
T  29228549 tttcat 29228544  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 88 - 193
Target Start/End: Complemental strand, 29341948 - 29341843
Alignment:
Q  88 gggaagattcctactcaacttgggaatctctcacaattgcaacaccttaatctcagacttgatgatcttgttggagaaatccctttccaactcgaaaatc 187  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||| |||| ||     |||| ||  |||||| ||||||||||||||||| |||||    
T  29341948 gggaagattccttctcaacttggaaatctctcacaattgcaacaccttgatcttagcaacaatgaactcattggagcaatccctttccaactcggaaatc 29341849  T
Q  188 tttcat 193  Q
    ||||||    
T  29341848 tttcat 29341843  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 29229227 - 29229172
Alignment:
Q  12 aagaaggaagcaggaaaatacaca--ttccttaaacacaattttctatatgtgtgt 65  Q
    ||||||||||||||||||||||||  |||||||||||| ||| | | |||||||||    
T  29229227 aagaaggaagcaggaaaatacacaccttccttaaacacgattctttgtatgtgtgt 29229172  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 29342527 - 29342472
Alignment:
Q  12 aagaaggaagcaggaaaatacaca--ttccttaaacacaattttctatatgtgtgt 65  Q
    ||||||||||||||||||||||||  |||||||||||| ||| | | |||||||||    
T  29342527 aagaaggaagcaggaaaatacacaccttccttaaacacgattctttgtatgtgtgt 29342472  T

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Target: scaffold0061 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 88 - 196
Target Start/End: Complemental strand, 29916 - 29808
Alignment:
Q  88 gggaagattcctactcaacttgggaatctctcacaattgcaacaccttaatctcagacttgatgatcttgttggagaaatccctttccaactcgaaaatc 187  Q
    ||||||||||||| ||||||||||||||| |||||||||| ||| ||| |||| ||     |||||||   ||||||||||||||||||||||| |||||    
T  29916 gggaagattcctattcaacttgggaatctatcacaattgcgacatcttgatcttagcaggaatgatctgaatggagaaatccctttccaactcggaaatc 29817  T
Q  188 tttcattgt 196  Q
    |||||||||    
T  29816 tttcattgt 29808  T

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Target: scaffold0017 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 88 - 196
Target Start/End: Original strand, 168876 - 168984
Alignment:
Q  88 gggaagattcctactcaacttgggaatctctcacaattgcaacaccttaatctcagacttgatgatcttgttggagaaatccctttccaactcgaaaatc 187  Q
    ||||||||||||| ||||||||||||||| |||||||||| ||| ||| |||| ||     |||||||   ||||||||||||||||||||||| |||||    
T  168876 gggaagattcctattcaacttgggaatctatcacaattgcgacatcttgatcttagcaggaatgatctgaatggagaaatccctttccaactcggaaatc 168975  T
Q  188 tttcattgt 196  Q
    |||||||||    
T  168976 tttcattgt 168984  T

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Target: scaffold0017; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 173955 - 174003
Alignment:
Q  158 ttggagaaatccctttccaactcgaaaatctttcattgtagcaatctct 206  Q
    |||||||||||||||||||||||| |||||||||||||| ||| |||||    
T  173955 ttggagaaatccctttccaactcggaaatctttcattgttgcagtctct 174003  T

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Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 88 - 194
Target Start/End: Original strand, 44144872 - 44144978
Alignment:
Q  88 gggaagattcctactcaacttgggaatctctcacaattgcaacaccttaatctcagacttgatgatcttgttggagaaatccctttccaactcgaaaatc 187  Q
    |||||||||||| ||||||||||||||||||||| ||||| ||||||| || | ||     |||| ||  |||||||||||||||||||||||| |||||    
T  44144872 gggaagattcctgctcaacttgggaatctctcacgattgcgacaccttgattttagctacaatgaactcattggagaaatccctttccaactcggaaatc 44144971  T
Q  188 tttcatt 194  Q
    |||||||    
T  44144972 tttcatt 44144978  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 92 - 206
Target Start/End: Original strand, 44612085 - 44612199
Alignment:
Q  92 agattcctactcaacttgggaatctctcacaattgcaacaccttaatctcagacttgatgatcttgttggagaaatccctttccaactcgaaaatctttc 191  Q
    |||||||| ||||||||||||||||||||||||||| ||||||| |||| ||     |||| ||   ||||||||||||||||||||| | |||||||||    
T  44612085 agattccttctcaacttgggaatctctcacaattgcgacaccttgatctaagtgacaatgaactcactggagaaatccctttccaacttggaaatctttc 44612184  T
Q  192 attgtagcaatctct 206  Q
    ||||| ||| |||||    
T  44612185 attgttgcagtctct 44612199  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 91 - 143
Target Start/End: Complemental strand, 44785809 - 44785757
Alignment:
Q  91 aagattcctactcaacttgggaatctctcacaattgcaacaccttaatctcag 143  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  44785809 aagattcctactcaacttgggaatctctcacaattgcgacaccttgatctcag 44785757  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 94 - 206
Target Start/End: Complemental strand, 11544788 - 11544676
Alignment:
Q  94 attcctactcaacttgggaatctctcacaattgcaacaccttaatctcagacttgatgatcttgttggagaaatccctttccaactcgaaaatctttcat 193  Q
    |||||| |||||||||| ||||||||||| |||  ||||||| |||| ||     |||| ||  |||||||||| ||||||||||||| |||||||||||    
T  11544788 attccttctcaacttggcaatctctcacagttgagacaccttgatcttagctacaatgaactcattggagaaattcctttccaactcggaaatctttcat 11544689  T
Q  194 tgtagcaatctct 206  Q
    ||| ||| |||||    
T  11544688 tgttgcagtctct 11544676  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 196
Target Start/End: Complemental strand, 29507624 - 29507531
Alignment:
Q  103 caacttgggaatctctcacaattgcaacaccttaatctcagacttgatgatcttgttggagaaatccctttccaactcgaaaatctttcattgt 196  Q
    |||||||| |||||||||||||| ||||||||| |||||||     |||| ||  |||||| ||||||||| |||||| |||||||||||||||    
T  29507624 caacttggaaatctctcacaattacaacaccttgatctcagctacaatgaactaattggagcaatccctttacaactccaaaatctttcattgt 29507531  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 29507696 - 29507656
Alignment:
Q  103 caacttgggaatctctcacaattgcaacaccttaatctcag 143  Q
    |||||||| |||||||||||||||||||||||| |||||||    
T  29507696 caacttggaaatctctcacaattgcaacaccttgatctcag 29507656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 29507768 - 29507728
Alignment:
Q  103 caacttgggaatctctcacaattgcaacaccttaatctcag 143  Q
    |||||||| |||||||||||||||||||||||| |||||||    
T  29507768 caacttggaaatctctcacaattgcaacaccttgatctcag 29507728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 141
Target Start/End: Complemental strand, 29507912 - 29507874
Alignment:
Q  103 caacttgggaatctctcacaattgcaacaccttaatctc 141  Q
    |||||||| |||||||||||||||||||||||| |||||    
T  29507912 caacttggaaatctctcacaattgcaacaccttgatctc 29507874  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 141
Target Start/End: Complemental strand, 29507984 - 29507946
Alignment:
Q  103 caacttgggaatctctcacaattgcaacaccttaatctc 141  Q
    |||||||| |||||||||||||||||||||||| |||||    
T  29507984 caacttggaaatctctcacaattgcaacaccttgatctc 29507946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 141
Target Start/End: Complemental strand, 29508128 - 29508090
Alignment:
Q  103 caacttgggaatctctcacaattgcaacaccttaatctc 141  Q
    |||||||| |||||||||||||||||||||||| |||||    
T  29508128 caacttggaaatctctcacaattgcaacaccttgatctc 29508090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 144
Target Start/End: Complemental strand, 29508197 - 29508159
Alignment:
Q  106 cttgggaatctctcacaattgcaacaccttaatctcaga 144  Q
    ||||| |||||||||||||||||||||||| ||||||||    
T  29508197 cttggaaatctctcacaattgcaacaccttgatctcaga 29508159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 29507840 - 29507800
Alignment:
Q  103 caacttgggaatctctcacaattgcaacaccttaatctcag 143  Q
    |||||||| |||||||||||||||||||| ||| |||||||    
T  29507840 caacttggaaatctctcacaattgcaacatcttgatctcag 29507800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 29508056 - 29508016
Alignment:
Q  103 caacttgggaatctctcacaattgcaacaccttaatctcag 143  Q
    |||||||| |||||||||||||||||||| ||| |||||||    
T  29508056 caacttggaaatctctcacaattgcaacatcttgatctcag 29508016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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