View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11660_low_35 (Length: 298)
Name: NF11660_low_35
Description: NF11660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11660_low_35 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 2 - 298
Target Start/End: Original strand, 42467482 - 42467778
Alignment:
| Q |
2 |
aagtaagagaacctgagaagtgatatggcgctttccgtccacagtctcctccggcaaagaggggacagatgatttcctgcaaaagcaaatgaatctttat |
101 |
Q |
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| T |
42467482 |
aagtaagagaacctgagaagtgatatggcgctttccgtccacagtctcctcaggcaaagaggggacagatgatttcctgcaaaagcaaatgaatctttat |
42467581 |
T |
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| Q |
102 |
tttcatttcgaaaaagataggaaaataaaaaatatccaagccaaaagggctcccaaacatcaccttaaatcggtcgaataggtctcagctttcgcagcac |
201 |
Q |
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| T |
42467582 |
tttcatttcgaaaaagataggaaaataaaaaatattcaagccaaaagagctccaaaacttcaccttaaatcggtcgaataggtctcagctttcgcagcac |
42467681 |
T |
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| Q |
202 |
gttttgtaggtcgcaannnnnnngcttgttcgcaagcatcgttatcctcattgttgttatcctctgtcttaattccagtccccgctaacacccattt |
298 |
Q |
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| T |
42467682 |
gttttgtaggtcgcaatttttttgcttgttcgcaagcatcgttatcctcattgttgttatcctctgtcttaattccagtaccagctaacacccattt |
42467778 |
T |
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Target: chr4 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 9 - 107
Target Start/End: Complemental strand, 34225307 - 34225209
Alignment:
| Q |
9 |
agaacctgagaagtgatatggcgctttccgtccacagtctcctccggcaaagaggggacagatgatttcctgcaaaagcaaatgaatctttattttcat |
107 |
Q |
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||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||| || ||||| |||||| |
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| T |
34225307 |
agaacctgagaagtgatatagcgctttccgtccgcagtctcctctggcaaagaggggacagctgatttcctgcaaaagcaaaacaaactttagtttcat |
34225209 |
T |
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