View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11660_low_37 (Length: 293)
Name: NF11660_low_37
Description: NF11660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11660_low_37 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 287
Target Start/End: Complemental strand, 42550320 - 42550052
Alignment:
| Q |
17 |
atatttgggtatcaagatgtgttggaagattacaaaagtgtgaatcagattgttgatgttctaaccaaaggtgttaaaattgaagcgtttagaataaaaa |
116 |
Q |
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| T |
42550320 |
atatttgggtatcaagatgtgttggaagattacaaaagtgtgaatcagattgttgatgttctaaccaaaggtgttaaaattgaagcgtttagaataaaaa |
42550221 |
T |
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| Q |
117 |
c----cgtaaccatgataagattgaaatgaaggtagaagtaagtgnnnnnnnnnnnnnnncaatgaataattaagatattttcttcggttctttgtaaca |
212 |
Q |
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| T |
42550220 |
aaaaacgtaaccatgataagattgaaatgaaggtagaattaagtgtttttttttt------aatgaataattaagatattttcttcggttctttataaca |
42550127 |
T |
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| Q |
213 |
attgagaaaaatggagaaaatcccacttgaaagaattcattctcccagcaacggagtctcatatcctatctgtgc |
287 |
Q |
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| T |
42550126 |
attgagaaaaatggagaaaatcccacttgaaagaattcattctcccagcaacggagtctcatatccaatgtgtgc |
42550052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 254
Target Start/End: Complemental strand, 18373070 - 18373022
Alignment:
| Q |
206 |
tgtaacaattgagaaaaatggagaaaatcccacttgaaagaattcattc |
254 |
Q |
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| T |
18373070 |
tgtaacaattgagaaaaatggaaaaaattccacttgaaagaattcattc |
18373022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 107
Target Start/End: Complemental strand, 15038989 - 15038919
Alignment:
| Q |
37 |
gttggaagattacaaaagtgtgaatcagattgttgatgttctaaccaaaggtgttaaaattgaagcgttta |
107 |
Q |
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| T |
15038989 |
gttggaacattccaaaagtgagaatcagattgcagatgttctaaccaaaggtgttaagattgaagtgttta |
15038919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 30364346 - 30364394
Alignment:
| Q |
206 |
tgtaacaattgagaaaaatggagaaaatcccacttgaaagaattcattc |
254 |
Q |
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| T |
30364346 |
tgtaacaattgagaaaaatggagaaaatttcacttgagagaatccattc |
30364394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 6734443 - 6734492
Alignment:
| Q |
206 |
tgtaacaattgagaaaaatggagaaaatcccacttgaaagaattcattct |
255 |
Q |
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| T |
6734443 |
tgtaagaattgaaaaaaatggagaaaattccacttaaaagaatacattct |
6734492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 15390342 - 15390390
Alignment:
| Q |
206 |
tgtaacaattgagaaaaatggagaaaatcccacttgaaagaattcattc |
254 |
Q |
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| T |
15390342 |
tgtaacaattgagaaaaatggagaaaattatacttgagagaatccattc |
15390390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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