View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11660_low_4 (Length: 653)
Name: NF11660_low_4
Description: NF11660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11660_low_4 |
 | |
|
| [»] scaffold0227 (1 HSPs) |
| | |
|
| [»] scaffold0026 (1 HSPs) |
| | |
|
| [»] scaffold0063 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 54641670 - 54641250
Alignment:
| Q |
1 |
gctctatcattatactt-----tatgggaccctggtggacacttttgttatacttcaaatcccaccgcgataggagaagagaaaggctgggaagatgtag |
95 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54641670 |
gctctatcattatacttcaagttatgggaccctggtggacacttttgttatacttcaaatcccaccgcgataggagaagagaaaggctgggaagatgtag |
54641571 |
T |
|
| Q |
96 |
aaatggggaaaatagagagaaatgtagaaaatgcccatatgcatgtcatgattgtggaaatggaacaagagagcaaa-cggatttgtgcaaacttctttg |
194 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
54641570 |
aaatggggaaaatagagaga--tgtagaaaatgcccatatgcatgtcatgattgtggaaatggaacaagagagcaaaacggatttgtgcaaacttctttg |
54641473 |
T |
|
| Q |
195 |
caataaagaaatgagtatggggtcagagataaggggaactactatgggcaccacgacatcaatcatcctgtannnnnnnatcaaaaatatcactacaaac |
294 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
54641472 |
caataaagaaatgagaatggggtcagagataaggggaactactatgggcaccacgacatcaatcatcctgtatttttttatcaaaaatatcactacaaac |
54641373 |
T |
|
| Q |
295 |
agagtatatgatcaaggcataagtttgcatgattcacacatcaccctgtcattatacttcaagttatgggaccctggtgcacacttctgttatccctcac |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
54641372 |
agagtatatgatcaaggcataagtttgcatgattcacacatcaccctgtcattatacttcaagttatgggaccctggtggacacttctgttatccctcac |
54641273 |
T |
|
| Q |
395 |
cttgaggacaaggtgattctttt |
417 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
54641272 |
cttgaggacaaggtgattctttt |
54641250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 51 - 387
Target Start/End: Complemental strand, 54641955 - 54641620
Alignment:
| Q |
51 |
caaatcccaccgcgataggagaagagaaaggctgggaagatgtagaaatggggaaaatagagagaaatgtagaaaatgcccatatgcatgtcatgattgt |
150 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
54641955 |
caaatcccaccgcgataggagaagagaaaggctgggaagatgtacaaatggggaaaatagagaga--tgtagaaaatgcccgtatgcatgtcatgattgt |
54641858 |
T |
|
| Q |
151 |
ggaaatggaacaagagagcaaa-cggatttgtgcaaacttctttgcaataaagaaatgagtatggggtcagagataaggggaactactatgggcaccacg |
249 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54641857 |
ggaaatggaacaggagagcaaaacggatttgtgcaaacttctttgcaatagagaaatgagtatggggtcagagataaggggaactactatgggcaccacg |
54641758 |
T |
|
| Q |
250 |
acatcaatcatcctgtannnnnnnatcaaaaatatcactacaaacagagtatatgatcaaggcataagtttgcatgattcacacatcaccctgtcattat |
349 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | || ||||||| |
|
|
| T |
54641757 |
acatcaatcatcctgtatttttttatcaaaaatatcactacaaacagagtatatgatcaaggcataagtttgcatgattcacatatcgctctatcattat |
54641658 |
T |
|
| Q |
350 |
acttcaagttatgggaccctggtgcacacttctgttat |
387 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
54641657 |
acttcaagttatgggaccctggtggacacttttgttat |
54641620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 51 - 416
Target Start/End: Complemental strand, 54938440 - 54938074
Alignment:
| Q |
51 |
caaatcccaccgcgataggagaagagaaaggctgggaag-atgtagaaatggggaaaatagagagaaatgtagaaaatgcccatatgcatgtcatgattg |
149 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
54938440 |
caaatcccaccgcgataggagaagagaaaggtttggaaggatgaagaaatggggaaaatagagagatatgtagaaaatgcccatatgcatgtcatgatta |
54938341 |
T |
|
| Q |
150 |
tggaaatggaacaagagagcaaa-cggatttgtgcaaacttctttgcaataaagaaatgagtatggggtcagagataaggggaactactatgggcaccac |
248 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
54938340 |
tggaaatggaacaggagagcaaaacggatttgtgcaaacttaattgcaataaagaaatgagtatggggtcagagataagggggactactatgggcaccac |
54938241 |
T |
|
| Q |
249 |
gacatcaatcatcctgtannnnnnnatcaaaaatatcactacaaacagagtatatgatcaaggcataagtttgcatgattcacacatcaccctgtcatta |
348 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
54938240 |
aacatcaatcatccagtatttttttctcaaaaatatcactacaaacagagtatatgatcagggcataagtttgcatgattcacacatcgctctgtcatta |
54938141 |
T |
|
| Q |
349 |
tacttcaagttatgggaccctggtgcacacttctgttatccctcaccttgaggacaaggtgattcttt |
416 |
Q |
| |
|
|||||| ||||||||||||| |||| |||||| || ||||| |||||||||||| ||||||| ||||| |
|
|
| T |
54938140 |
tacttc-agttatgggacccaggtggacacttatgatatccttcaccttgaggataaggtgaatcttt |
54938074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 496 - 635
Target Start/End: Complemental strand, 54641153 - 54641014
Alignment:
| Q |
496 |
ggaacaggggaaatacttggggactggttactggataaataagggatctgaaggacaatgtcgataggcattttattggggactggttattggttgggag |
595 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54641153 |
ggaacaggggaaatacttggggactggttgctggataaataagggatctgaaggacaatgtcgataggcattttattggggactggttattggttgggag |
54641054 |
T |
|
| Q |
596 |
agaccaagctctcgaattcttgggaacctattgtgcaatc |
635 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54641053 |
agaccaagctctcgaattcttgggaacctattgtgcaatc |
54641014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 522 - 635
Target Start/End: Complemental strand, 54642522 - 54642409
Alignment:
| Q |
522 |
gttactggataaataagggatctgaaggacaatgtcgataggcattttattggggactggttattggttgggagagaccaagctctcgaattcttgggaa |
621 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
54642522 |
gttactggataaataagggatctgaaggacaatgtcgataggcattttattggggactggttattggttgggagagaccaacctctcgaattcttgggaa |
54642423 |
T |
|
| Q |
622 |
cctattgtgcaatc |
635 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
54642422 |
cctattgtgtaatc |
54642409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 564 - 618
Target Start/End: Original strand, 22072494 - 22072549
Alignment:
| Q |
564 |
cattttattggggactggttattggtt-gggagagaccaagctctcgaattcttgg |
618 |
Q |
| |
|
||||||||| |||||||| |||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
22072494 |
cattttatttgggactggatattggtttgggagagaccaaactctcgaattcttgg |
22072549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 591 - 620
Target Start/End: Complemental strand, 45638773 - 45638744
Alignment:
| Q |
591 |
gggagagaccaagctctcgaattcttggga |
620 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
45638773 |
gggagagaccaagctctcgaattcttggga |
45638744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 51 - 416
Target Start/End: Original strand, 13078070 - 13078436
Alignment:
| Q |
51 |
caaatcccaccgcgataggagaagagaaaggctgggaagatgtagaaatggggaaaatagagagaaatgtagaaaatgcccatatgcatgtcatgattgt |
150 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
13078070 |
caaatcccaccgcgataggagaagagaaaggttgggaagatgtagaaatggggaaaatagagagagatgtagaaaatgtccatatgcatgtcatgattgt |
13078169 |
T |
|
| Q |
151 |
ggaaatggaacaagagagc-aaacggatttgtgcaaacttctttgcaataaagaaatgagtatggggtcagagataaggggaactactatgggcaccacg |
249 |
Q |
| |
|
|||||||| ||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
13078170 |
ggaaatgggacaggagagcaaaacagatttgtgcaaacttctttgcaataaagaaatgagtatggggtcagagataaggggaactactgtgggcaccacg |
13078269 |
T |
|
| Q |
250 |
acatcaatcatcctgtannnnnnnatcaaaaatatcactacaaacagagtatatgatcaaggcataagtttgcatgattcacacatcaccctgtcattat |
349 |
Q |
| |
|
||||||||||||||||| | ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
13078270 |
acatcaatcatcctgtattttttgctaaaaaatatcaccacaaacagggtatatgatcaaggcataagtttgcatgattcacacagtgctctgtcattat |
13078369 |
T |
|
| Q |
350 |
acttcaagttatgggaccctggtgcacacttctgttatccctcaccttgaggacaaggtgattcttt |
416 |
Q |
| |
|
||||||||||||||||||| |||| |||||| || ||||| |||||||||||||||||||| ||||| |
|
|
| T |
13078370 |
acttcaagttatgggacccaggtggacacttatgatatccttcaccttgaggacaaggtgaatcttt |
13078436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 340 - 416
Target Start/End: Original strand, 6082221 - 6082297
Alignment:
| Q |
340 |
ctgtcattatacttcaagttatgggaccctggtgcacacttctgttatccctcaccttgaggacaaggtgattcttt |
416 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| ||||| |
|
|
| T |
6082221 |
ctgtcactctacttcaagttatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatcttt |
6082297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 522 - 635
Target Start/End: Original strand, 6515445 - 6515561
Alignment:
| Q |
522 |
gttactggataaataagggatctgaaggacaatgtcgataggcattttattggggactggttattggttgggagaga-ccaag-ctctcgaa-ttcttgg |
618 |
Q |
| |
|
|||||| |||||||| | |||||||||| || ||| |||||||| ||| |||||||| ||| |||||||||||| ||||| |||| ||| | ||||| |
|
|
| T |
6515445 |
gttactagataaataggaaatctgaaggagaacgtcaggaggcatttcatttgggactggatataggttgggagagacccaagactcttgaactccttgg |
6515544 |
T |
|
| Q |
619 |
gaacctattgtgcaatc |
635 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
6515545 |
gaacctattgtgtaatc |
6515561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 51 - 416
Target Start/End: Complemental strand, 39984414 - 39984048
Alignment:
| Q |
51 |
caaatcccaccgcgataggagaagagaaaggctgggaagatgtagaaatggggaaaatagagagaaatgtagaaaatgcccatatgcatgtcatgattgt |
150 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
39984414 |
caaatcccaccgcgataggagaagagaaaggttgggaagatgtagaaatggggaaaatagagagagatgtagaaaatgtccatatgcatgtcatgattgt |
39984315 |
T |
|
| Q |
151 |
ggaaatggaacaagagagc-aaacggatttgtgcaaacttctttgcaataaagaaatgagtatggggtcagagataaggggaactactatgggcaccacg |
249 |
Q |
| |
|
|||||||| ||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
39984314 |
ggaaatgggacaggagagcaaaacagatttgtgcaaacttctttgcaataaagaaatgagtatggggtcagagataaggggaactactgtgggcaccacg |
39984215 |
T |
|
| Q |
250 |
acatcaatcatcctgtannnnnnnatcaaaaatatcactacaaacagagtatatgatcaaggcataagtttgcatgattcacacatcaccctgtcattat |
349 |
Q |
| |
|
||||||||||||||||| | ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
39984214 |
acatcaatcatcctgtattttttgctaaaaaatatcaccacaaacagggtatatgatcaaggcataagtttgcatgattcacacagtgctctgtcattat |
39984115 |
T |
|
| Q |
350 |
acttcaagttatgggaccctggtgcacacttctgttatccctcaccttgaggacaaggtgattcttt |
416 |
Q |
| |
|
||||||||||||||||||| |||| |||||| || ||||| |||||||||||||||||||| ||||| |
|
|
| T |
39984114 |
acttcaagttatgggacccaggtggacacttatgatatccttcaccttgaggacaaggtgaatcttt |
39984048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 541 - 618
Target Start/End: Original strand, 8638906 - 8638983
Alignment:
| Q |
541 |
atctgaaggacaatgtcgataggcattttattggggactggttattggttgggagagaccaagctctcgaattcttgg |
618 |
Q |
| |
|
||||||||||||||| || | ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
8638906 |
atctgaaggacaatggcggctgacattttattggggactggttattggttgggagagaacaagctctctaattcttgg |
8638983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 349 - 416
Target Start/End: Original strand, 35389071 - 35389138
Alignment:
| Q |
349 |
tacttcaagttatgggaccctggtgcacacttctgttatccctcaccttgaggacaaggtgattcttt |
416 |
Q |
| |
|
||||||||||||||||| ||||||| |||||| |||||||| ||| |||||||||||||||| ||||| |
|
|
| T |
35389071 |
tacttcaagttatgggatcctggtggacacttatgttatccttcaacttgaggacaaggtgaatcttt |
35389138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 574 - 635
Target Start/End: Complemental strand, 41712340 - 41712278
Alignment:
| Q |
574 |
gggactggttattggttgggagagaccaagctctcgaa-ttcttgggaacctattgtgcaatc |
635 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||| |||| |
|
|
| T |
41712340 |
gggactggttattgattgggagagaccaagctctcgaatttcttgggaacccattgtgtaatc |
41712278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 352 - 416
Target Start/End: Complemental strand, 2386663 - 2386599
Alignment:
| Q |
352 |
ttcaagttatgggaccctggtgcacacttctgttatccctcaccttgaggacaaggtgattcttt |
416 |
Q |
| |
|
||||| ||||||||| |||||| |||||| || ||||| |||||||||||||||||||| ||||| |
|
|
| T |
2386663 |
ttcaacttatgggactctggtggacacttatgctatccttcaccttgaggacaaggtgaatcttt |
2386599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 560 - 618
Target Start/End: Original strand, 8728609 - 8728668
Alignment:
| Q |
560 |
taggcattttattggggactggttattggtt-gggagagaccaagctctcgaattcttgg |
618 |
Q |
| |
|
||||||||||||| ||||||| |||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
8728609 |
taggcattttatttgggactgaatattggtttgggagagaccaaactctcgaattcttgg |
8728668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 560 - 618
Target Start/End: Original strand, 9080496 - 9080555
Alignment:
| Q |
560 |
taggcattttattggggactggttattggtt-gggagagaccaagctctcgaattcttgg |
618 |
Q |
| |
|
||||||||||||| ||||||| |||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
9080496 |
taggcattttatttgggactgaatattggtttgggagagaccaaactctcgaattcttgg |
9080555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 560 - 618
Target Start/End: Original strand, 42510600 - 42510657
Alignment:
| Q |
560 |
taggcattttattggggactggttattggttgggagagaccaagctctcgaattcttgg |
618 |
Q |
| |
|
||||||||| ||| ||||| ||||||||||||||||| || | |||||||||||||||| |
|
|
| T |
42510600 |
taggcatttcatttgggacaggttattggttgggaga-acaatgctctcgaattcttgg |
42510657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 618
Target Start/End: Original strand, 54994703 - 54994737
Alignment:
| Q |
584 |
attggttgggagagaccaagctctcgaattcttgg |
618 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |
|
|
| T |
54994703 |
attggtagggagagaccaagctctcgaattcttgg |
54994737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 51 - 416
Target Start/End: Original strand, 14685096 - 14685462
Alignment:
| Q |
51 |
caaatcccaccgcgataggagaagagaaaggctgggaagatgtagaaatggggaaaatagagagaaatgtagaaaatgcccatatgcatgtcatgattgt |
150 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
14685096 |
caaatcccaccgcgataggagaagagaaaggttgggaagatgtagaaatggggaaaatagagagagatgtagaaaatgtccatatgcatgtcatgattgt |
14685195 |
T |
|
| Q |
151 |
ggaaatggaacaagagagc-aaacggatttgtgcaaacttctttgcaataaagaaatgagtatggggtcagagataaggggaactactatgggcaccacg |
249 |
Q |
| |
|
|||||||| ||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14685196 |
ggaaatgggacaggagagcaaaacagatttgtgcaaacttctttgcaataaagaaatgagtatggggtcagagataaggggaactactgtgggcaccacg |
14685295 |
T |
|
| Q |
250 |
acatcaatcatcctgtannnnnnnatcaaaaatatcactacaaacagagtatatgatcaaggcataagtttgcatgattcacacatcaccctgtcattat |
349 |
Q |
| |
|
||||||||||||||||| | ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
14685296 |
acatcaatcatcctgtattttttgctaaaaaatatcaccacaaacagggtatatgatcaaggcataagtttgcatgattcacacagtgctctgtcattat |
14685395 |
T |
|
| Q |
350 |
acttcaagttatgggaccctggtgcacacttctgttatccctcaccttgaggacaaggtgattcttt |
416 |
Q |
| |
|
||||||||||||||||||| |||| |||||| || ||||| |||||||||||||||||||| ||||| |
|
|
| T |
14685396 |
acttcaagttatgggacccaggtggacacttatgatatccttcaccttgaggacaaggtgaatcttt |
14685462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 51 - 416
Target Start/End: Original strand, 40421920 - 40422286
Alignment:
| Q |
51 |
caaatcccaccgcgataggagaagagaaaggctgggaagatgtagaaatggggaaaatagagagaaatgtagaaaatgcccatatgcatgtcatgattgt |
150 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
40421920 |
caaatcccaccgcgataggagaagagaaaggttgggaagatgtagaaatggggaaaatagagagagatgtagaaaatgtccatatgcatgtcatgattgt |
40422019 |
T |
|
| Q |
151 |
ggaaatggaacaagagagc-aaacggatttgtgcaaacttctttgcaataaagaaatgagtatggggtcagagataaggggaactactatgggcaccacg |
249 |
Q |
| |
|
|||||||| ||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
40422020 |
ggaaatgggacaggagagcaaaacagatttgtgcaaacttctttgcaataaagaaatgagtatggggtcagagataaggggaactactgtgggcaccacg |
40422119 |
T |
|
| Q |
250 |
acatcaatcatcctgtannnnnnnatcaaaaatatcactacaaacagagtatatgatcaaggcataagtttgcatgattcacacatcaccctgtcattat |
349 |
Q |
| |
|
||||||||||||||||| | ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
40422120 |
acatcaatcatcctgtattttttgctaaaaaatatcaccacaaacagggtatatgatcaaggcataagtttgcatgattcacacagtgctctgtcattat |
40422219 |
T |
|
| Q |
350 |
acttcaagttatgggaccctggtgcacacttctgttatccctcaccttgaggacaaggtgattcttt |
416 |
Q |
| |
|
||||||||||||||||||| |||| |||||| || ||||| |||||||||||||||||||| ||||| |
|
|
| T |
40422220 |
acttcaagttatgggacccaggtggacacttatgatatccttcaccttgaggacaaggtgaatcttt |
40422286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 51 - 416
Target Start/End: Original strand, 21306952 - 21307314
Alignment:
| Q |
51 |
caaatcccaccgcgataggagaagagaaaggctgggaagatgtagaaatggggaaaatagagagaaatgtagaaaatgcccatatgcatgtcatgattgt |
150 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
21306952 |
caaatcccaccgcgataggagaagagaaaggttgggaagatgtagaaatggggaaaatagagagagatgtagaaaatgtccatatgcatgtcatgattgt |
21307051 |
T |
|
| Q |
151 |
ggaaatggaacaagagagc-aaacggatttgtgcaaacttctttgcaataaagaaatgagtatggggtcagagataaggggaactactatgggcaccacg |
249 |
Q |
| |
|
|||||||| ||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
21307052 |
ggaaatgggacaggagagcaaaacagatttgtgcaaacttctttgcaataaagaaatgagtatggggtcagagataaggggaactactgtgggcaccacg |
21307151 |
T |
|
| Q |
250 |
acatcaatcatcctgtannnnnnnatcaaaaatatcactacaaacagagtatatgatcaaggcataagtttgcatgattcacacatcaccctgtcattat |
349 |
Q |
| |
|
||||||||||||||||| | ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
21307152 |
acatcaatcatcctgtattttttgctaaaaaatatcaccacaaacagggtatatgatcaaggcataagtttgcatgattcacacagtgctctgtcattat |
21307251 |
T |
|
| Q |
350 |
acttcaagttatgggaccctggtgcacacttctgttatccctcaccttgaggacaaggtgattcttt |
416 |
Q |
| |
|
||||||||||||||||||| |||| |||||| | ||| |||||||||||||||||||| ||||| |
|
|
| T |
21307252 |
acttcaagttatgggacccaggtggacacttat----tccttcaccttgaggacaaggtgaatcttt |
21307314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 583 - 617
Target Start/End: Complemental strand, 13218810 - 13218776
Alignment:
| Q |
583 |
tattggttgggagagaccaagctctcgaattcttg |
617 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |
|
|
| T |
13218810 |
tattgattgggagagaccaagctctcgaattcttg |
13218776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 9e-38; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 522 - 618
Target Start/End: Complemental strand, 16890273 - 16890177
Alignment:
| Q |
522 |
gttactggataaataagggatctgaaggacaatgtcgataggcattttattggggactggttattggttgggagagaccaagctctcgaattcttgg |
618 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||| |
|
|
| T |
16890273 |
gttactggataaataagggatcttaaggacaatgtcgataggcattttattggggactggttactggttgggagtgaccaagctcccgaattcttgg |
16890177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 340 - 416
Target Start/End: Original strand, 10583719 - 10583795
Alignment:
| Q |
340 |
ctgtcattatacttcaagttatgggaccctggtgcacacttctgttatccctcaccttgaggacaaggtgattcttt |
416 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| ||||| |
|
|
| T |
10583719 |
ctgtcactctacttcaagttatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatcttt |
10583795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 340 - 416
Target Start/End: Original strand, 49123075 - 49123151
Alignment:
| Q |
340 |
ctgtcattatacttcaagttatgggaccctggtgcacacttctgttatccctcaccttgaggacaaggtgattcttt |
416 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| ||||| |
|
|
| T |
49123075 |
ctgtcactctacttcaagttatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatcttt |
49123151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 522 - 578
Target Start/End: Original strand, 34996546 - 34996602
Alignment:
| Q |
522 |
gttactggataaataagggatctgaaggacaatgtcgataggcattttattggggac |
578 |
Q |
| |
|
|||||| |||||||| || ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
34996546 |
gttactagataaatagggaatctgaaggacaatgtcagtaggcattttattggggac |
34996602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 564 - 618
Target Start/End: Complemental strand, 17826299 - 17826244
Alignment:
| Q |
564 |
cattttattggggactggttattggtt-gggagagaccaagctctcgaattcttgg |
618 |
Q |
| |
|
||||||||| | |||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
17826299 |
cattttatttgagactggatattggtttgggagagaccaagctctcgaattcttgg |
17826244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 416
Target Start/End: Complemental strand, 23541376 - 23541321
Alignment:
| Q |
361 |
tgggaccctggtgcacacttctgttatccctcaccttgaggacaaggtgattcttt |
416 |
Q |
| |
|
||||||||||||| |||||| |||||||| | ||||||||||||| |||| ||||| |
|
|
| T |
23541376 |
tgggaccctggtggacacttatgttatcctttaccttgaggacaacgtgaatcttt |
23541321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 574 - 618
Target Start/End: Complemental strand, 30038187 - 30038143
Alignment:
| Q |
574 |
gggactggttattggttgggagagaccaagctctcgaattcttgg |
618 |
Q |
| |
|
||||||| |||||| |||||||||||||| |||| |||||||||| |
|
|
| T |
30038187 |
gggactgattattgattgggagagaccaaactcttgaattcttgg |
30038143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 2e-32; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 524 - 618
Target Start/End: Original strand, 21661114 - 21661209
Alignment:
| Q |
524 |
tactggataaataagggatctgaaggacaatgtcgataggcattttatt-ggggactggttattggttgggagagaccaagctctcgaattcttgg |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
21661114 |
tactggataaataagggatctgaaggacaatgtcagtaggcattttattgggggactggttattgtttgggagagaccaagctctcgaattattgg |
21661209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 560 - 618
Target Start/End: Complemental strand, 5176689 - 5176631
Alignment:
| Q |
560 |
taggcattttattggggactggttattggttgggagagaccaagctctcgaattcttgg |
618 |
Q |
| |
|
||||||||| ||| ||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
5176689 |
taggcatttcatttgggacaggatattggttgggagagaccaagctctcgaattcttgg |
5176631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 559 - 616
Target Start/End: Complemental strand, 20998742 - 20998684
Alignment:
| Q |
559 |
ataggcattttattg-gggactggttattggttgggagagaccaagctctcgaattctt |
616 |
Q |
| |
|
|||||||||||||| |||||||| ||||| |||||||||||| ||||||||||||||| |
|
|
| T |
20998742 |
ataggcattttattttgggactggatattgattgggagagaccgagctctcgaattctt |
20998684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 559 - 616
Target Start/End: Original strand, 21012621 - 21012679
Alignment:
| Q |
559 |
ataggcattttattg-gggactggttattggttgggagagaccaagctctcgaattctt |
616 |
Q |
| |
|
|||||||||||||| |||||||| ||||| |||||||||||| ||||||||||||||| |
|
|
| T |
21012621 |
ataggcattttattttgggactggatattgattgggagagaccgagctctcgaattctt |
21012679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0227 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0227
Description:
Target: scaffold0227; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 340 - 415
Target Start/End: Original strand, 12038 - 12113
Alignment:
| Q |
340 |
ctgtcattatacttcaagttatgggaccctggtgcacacttctgttatccctcaccttgaggacaaggtgattctt |
415 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| |||| |
|
|
| T |
12038 |
ctgtcactctacttcaagttatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatctt |
12113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 340 - 416
Target Start/End: Complemental strand, 18132182 - 18132106
Alignment:
| Q |
340 |
ctgtcattatacttcaagttatgggaccctggtgcacacttctgttatccctcaccttgaggacaaggtgattcttt |
416 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||| |||||| | |||||| |||||||||||||||||||| ||||| |
|
|
| T |
18132182 |
ctgtcactctacttcaagttatgggaccctggtggacacttattttatccttcaccttgaggacaaggtgaatcttt |
18132106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 618
Target Start/End: Complemental strand, 21395710 - 21395676
Alignment:
| Q |
584 |
attggttgggagagaccaagctctcgaattcttgg |
618 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |
|
|
| T |
21395710 |
attggtagggagagaccaagctctcgaattcttgg |
21395676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 349 - 416
Target Start/End: Complemental strand, 29526435 - 29526368
Alignment:
| Q |
349 |
tacttcaagttatgggaccctggtgcacacttctgttatccctcaccttgaggacaaggtgattcttt |
416 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||| |||| |||||||||||||||||||| ||||| |
|
|
| T |
29526435 |
tacttcaagttatgggaccctggtggacacttatgtcatccttcaccttgaggacaaggtgaatcttt |
29526368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 340 - 410
Target Start/End: Complemental strand, 39702014 - 39701944
Alignment:
| Q |
340 |
ctgtcattatacttcaagttatgggaccctggtgcacacttctgttatccctcaccttgaggacaaggtga |
410 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||| |||||| | |||||| |||||||||||||||||||| |
|
|
| T |
39702014 |
ctgtcattgtacttcaagttttgggaccctggtggacacttatattatccttcaccttgaggacaaggtga |
39701944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 618
Target Start/End: Complemental strand, 29526157 - 29526123
Alignment:
| Q |
584 |
attggttgggagagaccaagctctcgaattcttgg |
618 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |
|
|
| T |
29526157 |
attggtagggagagaccaagctctcgaattcttgg |
29526123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 574 - 618
Target Start/End: Original strand, 37473585 - 37473629
Alignment:
| Q |
574 |
gggactggttattggttgggagagaccaagctctcgaattcttgg |
618 |
Q |
| |
|
|||||||| ||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
37473585 |
gggactggatattgattgggagagacagagctctcgaattcttgg |
37473629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 352 - 416
Target Start/End: Original strand, 80522 - 80586
Alignment:
| Q |
352 |
ttcaagttatgggaccctggtgcacacttctgttatccctcaccttgaggacaaggtgattcttt |
416 |
Q |
| |
|
|||||||||||||||| ||||| |||||| | || ||| |||||||||||||||||||| ||||| |
|
|
| T |
80522 |
ttcaagttatgggaccatggtggacacttatcttgtccttcaccttgaggacaaggtgaatcttt |
80586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0063 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0063
Description:
Target: scaffold0063; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 589 - 618
Target Start/End: Original strand, 33901 - 33930
Alignment:
| Q |
589 |
ttgggagagaccaagctctcgaattcttgg |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
33901 |
ttgggagagaccaagctctcgaattcttgg |
33930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University