View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11660_low_40 (Length: 272)
Name: NF11660_low_40
Description: NF11660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11660_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 46514397 - 46514507
Alignment:
| Q |
1 |
aatatgcaaccgaagaaattataacaatggtgccaagaagcttctccacaaacatccaattgaagaaaagggatatctgcaattcaactttctatattca |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46514397 |
aatatgcaaccgaagaaattataacaatggtgctaagaagcttctccacaaacatccaattgaagaaaagggatatctgcaattcaactttctatattca |
46514496 |
T |
|
| Q |
101 |
cgctttcaatt |
111 |
Q |
| |
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||||||||||| |
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| T |
46514497 |
cgctttcaatt |
46514507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 153 - 260
Target Start/End: Original strand, 46514539 - 46514648
Alignment:
| Q |
153 |
tgaaggaactacatcacatagatagggaaggaagtagtgtctgatat--atagataaaccataatcagagataaatcgacagtgggacgctagatccagt |
250 |
Q |
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||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
46514539 |
tgaaggaactacatcacatagatagggaaagaagtagtggctgatatatatagataaaccataatcagagataaatcgacagtggggcgttagatccagt |
46514638 |
T |
|
| Q |
251 |
gcaagcatag |
260 |
Q |
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|||||||||| |
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| T |
46514639 |
gcaagcatag |
46514648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 29117308 - 29117198
Alignment:
| Q |
1 |
aatatgcaaccgaagaaattataacaatggtgccaagaagcttctccacaaacatccaattgaagaaaagggatatctgcaattcaactttctatattca |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29117308 |
aatatgcaaccaaagaaattataacaatggtgccaagaagcttctccacaaacatccaattgaagaaaagggatatctgcaattcaactttctatattca |
29117209 |
T |
|
| Q |
101 |
cgctttcaatt |
111 |
Q |
| |
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||||||||||| |
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| T |
29117208 |
cgctttcaatt |
29117198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 13259560 - 13259450
Alignment:
| Q |
1 |
aatatgcaaccgaagaaattataacaatggtgccaagaagcttctccacaaacatccaattgaagaaaagggatatctgcaattcaactttctatattca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
13259560 |
aatatgcaaccgaagaaattataacaatggtgccaagaagcttctctacaaacatccaattgaagaaaagggatatatgcaattcaactttctatattca |
13259461 |
T |
|
| Q |
101 |
cgctttcaatt |
111 |
Q |
| |
|
||||||||||| |
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|
| T |
13259460 |
cgctttcaatt |
13259450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 153 - 260
Target Start/End: Complemental strand, 29117164 - 29117057
Alignment:
| Q |
153 |
tgaaggaactacatcacatagatagggaaggaagtagtgtctgatatatagataaaccataatcagagataaatcgacagtgggacgctagatccagtgc |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
29117164 |
tgaaggaactacatcacatagatagggaaggaaatagtgtctgatatatagataaatcataatcagagataaatcgacagtggggcgctagatccagtgc |
29117065 |
T |
|
| Q |
253 |
aagcatag |
260 |
Q |
| |
|
|||||||| |
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|
| T |
29117064 |
aagcatag |
29117057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 153 - 260
Target Start/End: Complemental strand, 13259416 - 13259309
Alignment:
| Q |
153 |
tgaaggaactacatcacatagatagggaaggaagtagtgtctgatatatagataaaccataatcagagataaatcgacagtgggacgctagatccagtgc |
252 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||| | ||||||||||||||| |
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| T |
13259416 |
tgaagaaactacatcacatagatagggaaggaaatagtgtctgatatatagataaatcataatcggagataaatcgacagtgaggcgctagatccagtgc |
13259317 |
T |
|
| Q |
253 |
aagcatag |
260 |
Q |
| |
|
|||||||| |
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|
| T |
13259316 |
aagcatag |
13259309 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 28020298 - 28020408
Alignment:
| Q |
1 |
aatatgcaaccgaagaaattataacaatggtgccaagaagcttctccacaaacatccaattgaagaaaagggatatctgcaattcaactttctatattca |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28020298 |
aatatgcaaccgaagaaattacaacaatggtgccaagaagcttttccacaaacatccaattgaagaaaagggatatctgcaattcaactttctatattca |
28020397 |
T |
|
| Q |
101 |
cgctttcaatt |
111 |
Q |
| |
|
||||||||||| |
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|
| T |
28020398 |
cgctttcaatt |
28020408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 168 - 260
Target Start/End: Original strand, 28020452 - 28020544
Alignment:
| Q |
168 |
acatagatagggaaggaagtagtgtctgatatatagataaaccataatcagagataaatcgacagtgggacgctagatccagtgcaagcatag |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| |
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| T |
28020452 |
acatagatagggaaggaagtagtgtctgatatatagataaaccataatcagagataaatcaacagtggggcgctagatccagtgcaatcatag |
28020544 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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