View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11660_low_46 (Length: 241)

Name: NF11660_low_46
Description: NF11660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11660_low_46
NF11660_low_46
[»] chr3 (16 HSPs)
chr3 (43-199)||(48452847-48452988)
chr3 (125-231)||(33639596-33639703)
chr3 (130-231)||(48207603-48207705)
chr3 (115-230)||(54694918-54695035)
chr3 (125-203)||(48208340-48208419)
chr3 (184-222)||(33636993-33637031)
chr3 (115-168)||(46914046-46914100)
chr3 (115-168)||(263520-263573)
chr3 (115-168)||(29809282-29809335)
chr3 (130-168)||(264407-264445)
chr3 (116-174)||(31897977-31898035)
chr3 (116-174)||(31913686-31913744)
chr3 (116-174)||(31947334-31947392)
chr3 (125-174)||(47607192-47607241)
chr3 (130-201)||(54695670-54695742)
chr3 (130-178)||(55203706-55203754)
[»] chr1 (5 HSPs)
chr1 (130-231)||(19990280-19990382)
chr1 (115-231)||(16073268-16073382)
chr1 (125-202)||(19991023-19991100)
chr1 (130-230)||(28313844-28313945)
chr1 (115-173)||(16386326-16386384)
[»] chr7 (8 HSPs)
chr7 (115-168)||(20008229-20008282)
chr7 (115-168)||(20009094-20009148)
chr7 (132-168)||(20123283-20123319)
chr7 (130-168)||(29525111-29525149)
chr7 (126-168)||(34167226-34167268)
chr7 (130-203)||(22709448-22709521)
chr7 (125-161)||(19156222-19156258)
chr7 (125-161)||(20755621-20755657)
[»] chr5 (11 HSPs)
chr5 (115-168)||(23237030-23237083)
chr5 (115-168)||(10555367-10555421)
chr5 (115-168)||(10556256-10556309)
chr5 (125-168)||(33766484-33766527)
chr5 (125-168)||(42994476-42994519)
chr5 (115-168)||(3957223-3957277)
chr5 (130-168)||(23244365-23244403)
chr5 (125-168)||(33767348-33767391)
chr5 (136-178)||(19186444-19186486)
chr5 (115-168)||(3956355-3956408)
chr5 (136-168)||(42948184-42948216)
[»] chr2 (5 HSPs)
chr2 (115-230)||(29156141-29156257)
chr2 (136-174)||(8194276-8194314)
chr2 (115-168)||(24121384-24121438)
chr2 (115-168)||(26233837-26233891)
chr2 (115-168)||(26234880-26234933)
[»] chr6 (4 HSPs)
chr6 (122-168)||(25344842-25344888)
chr6 (125-168)||(25345612-25345655)
chr6 (127-168)||(21777859-21777900)
chr6 (131-175)||(4485959-4486003)
[»] chr8 (4 HSPs)
chr8 (117-180)||(8038763-8038825)
chr8 (115-168)||(18684296-18684349)
chr8 (115-168)||(18729861-18729914)
chr8 (115-168)||(42269356-42269409)
[»] chr4 (6 HSPs)
chr4 (131-168)||(21436269-21436306)
chr4 (115-168)||(43416576-43416629)
chr4 (117-168)||(38977496-38977547)
chr4 (115-168)||(24195570-24195624)
chr4 (115-168)||(11311472-11311525)
chr4 (132-168)||(21435406-21435442)
[»] scaffold0176 (1 HSPs)
scaffold0176 (126-168)||(34047-34089)
[»] scaffold0548 (1 HSPs)
scaffold0548 (115-168)||(6877-6930)


Alignment Details
Target: chr3 (Bit Score: 91; Significance: 3e-44; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 43 - 199
Target Start/End: Original strand, 48452847 - 48452988
Alignment:
Q  43 gaacggtttagtttattcctaatcaatgtgaaatttaacactcatatttgagtttaaacaattgtgtgtgtgtatatatataaggaaggatatattgact 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||               |||| |||| |||||||||||||    
T  48452847 gaacggtttagtttattcctaatcaatgtgaaatttaacactcatatttgagtttcaacaat---------------atatgaggatggatatattgact 48452931  T
Q  143 ctaagagtaagtctaaagagttactcaaaatcttaatctttatcttaataataatta 199  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  48452932 ctaagagtaagtctaaagagttactcaaaatcttaatcttcatcttaataataatta 48452988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 125 - 231
Target Start/End: Complemental strand, 33639703 - 33639596
Alignment:
Q  125 aggaaggatatattgactctaagagtaagtctaaagagttactcaaaatcttaa-tctttatcttaataataattaatggttataattgattcttaatag 223  Q
    |||| |||||||||||||| ||||||||||||||||| |||||| | |||||||  ||| || |||| |||||||||||| ||||||||||||||||||     
T  33639703 aggagggatatattgactccaagagtaagtctaaagacttactccagatcttaacccttcattttaaaaataattaatggctataattgattcttaataa 33639604  T
Q  224 tccctatg 231  Q
    || |||||    
T  33639603 tctctatg 33639596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 130 - 231
Target Start/End: Original strand, 48207603 - 48207705
Alignment:
Q  130 ggatatattgactctaagagtaagtctaaagagttactcaaaatcttaatcttt-atcttaataataattaatggttataattgattcttaatagtccct 228  Q
    |||||||||||||| |||| |||||||||||| ||| || |||||| || |||| |||||||||||||||||||| ||||||||||| |||||| ||| |    
T  48207603 ggatatattgactccaagaataagtctaaagacttattccaaatctaaacctttcatcttaataataattaatggctataattgatttttaataatcctt 48207702  T
Q  229 atg 231  Q
    |||    
T  48207703 atg 48207705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 115 - 230
Target Start/End: Original strand, 54694918 - 54695035
Alignment:
Q  115 tatatatata-aggaaggatatattgactctaagagtaagtctaaagagttactcaaaatctt-aatctttatcttaataataattaatggttataattg 212  Q
    |||||||||| |||| |||||| ||||||| |||||||| || |||||||||||| ||||||| |  ||| ||| ||||| |||||||||| ||||||||    
T  54694918 tatatatatataggagggatattttgactccaagagtaactcaaaagagttactccaaatcttgacccttcatcctaatattaattaatggctataattg 54695017  T
Q  213 attcttaatagtccctat 230  Q
    |||||||||  |||||||    
T  54695018 attcttaatcatccctat 54695035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 125 - 203
Target Start/End: Complemental strand, 48208419 - 48208340
Alignment:
Q  125 aggaaggatatattgactctaagagtaagtctaaagagttactcaaaatcttaa-tctttatcttaataataattaatgg 203  Q
    |||| |||||||||||||| |||||||| || ||||| |||||| |||||||||  ||| ||||||||||||||||||||    
T  48208419 aggatggatatattgactccaagagtaactcaaaagaattactccaaatcttaacccttcatcttaataataattaatgg 48208340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 184 - 222
Target Start/End: Original strand, 33636993 - 33637031
Alignment:
Q  184 atcttaataataattaatggttataattgattcttaata 222  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  33636993 atcttaataataattaatggctataattgattcttaata 33637031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 46914046 - 46914100
Alignment:
Q  115 tatatatataagg-aaggatatattgactctaagagtaagtctaaagagttactc 168  Q
    ||||||||||||| |||||||||||||||| |||||||| ||||| |||||||||    
T  46914046 tatatatataagggaaggatatattgactccaagagtaactctaaggagttactc 46914100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 263520 - 263573
Alignment:
Q  115 tatatatataaggaaggatatattgactctaagagtaagtctaaagagttactc 168  Q
    |||||||||  ||| |||||||||||||| |||||||| |||||||||||||||    
T  263520 tatatatatggggagggatatattgactccaagagtaactctaaagagttactc 263573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 168
Target Start/End: Complemental strand, 29809335 - 29809282
Alignment:
Q  115 tatatatataaggaaggatatattgactctaagagtaagtctaaagagttactc 168  Q
    |||||||||| ||| |||||| ||||||| |||||||| |||||||||||||||    
T  29809335 tatatatatatggagggatattttgactccaagagtaattctaaagagttactc 29809282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 168
Target Start/End: Complemental strand, 264445 - 264407
Alignment:
Q  130 ggatatattgactctaagagtaagtctaaagagttactc 168  Q
    |||||||||||||| |||||||| |||||||||||||||    
T  264445 ggatatattgactccaagagtaactctaaagagttactc 264407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 174
Target Start/End: Complemental strand, 31898035 - 31897977
Alignment:
Q  116 atatatataaggaaggatatattgactctaagagtaagtctaaagagttactcaaaatc 174  Q
    |||||||| |||| ||||  |||||||||||||||||||  |||||||||||| |||||    
T  31898035 atatatatgaggagggatccattgactctaagagtaagtagaaagagttactccaaatc 31897977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 174
Target Start/End: Complemental strand, 31913744 - 31913686
Alignment:
Q  116 atatatataaggaaggatatattgactctaagagtaagtctaaagagttactcaaaatc 174  Q
    |||||||| |||| ||||  |||||||||||||||||||  |||||||||||| |||||    
T  31913744 atatatatgaggagggatccattgactctaagagtaagtagaaagagttactccaaatc 31913686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 174
Target Start/End: Complemental strand, 31947392 - 31947334
Alignment:
Q  116 atatatataaggaaggatatattgactctaagagtaagtctaaagagttactcaaaatc 174  Q
    |||||||| |||| ||||  |||||||||||||||||||  |||||||||||| |||||    
T  31947392 atatatatgaggagggatccattgactctaagagtaagtagaaagagttactccaaatc 31947334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 174
Target Start/End: Original strand, 47607192 - 47607241
Alignment:
Q  125 aggaaggatatattgactctaagagtaagtctaaagagttactcaaaatc 174  Q
    |||| |||||||||||||| ||||||||||| | |||||||||| |||||    
T  47607192 aggagggatatattgactcgaagagtaagtcaatagagttactccaaatc 47607241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 201
Target Start/End: Complemental strand, 54695742 - 54695670
Alignment:
Q  130 ggatatattgactctaagagtaagtctaaagagttactcaaaatcttaa-tctttatcttaataataattaat 201  Q
    |||||| ||||||  |||||||| || |||||||||||| |||||| ||  ||| ||||||||||||||||||    
T  54695742 ggatattttgacttcaagagtaactcaaaagagttactccaaatctaaacccttcatcttaataataattaat 54695670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 55203754 - 55203706
Alignment:
Q  130 ggatatattgactctaagagtaagtctaaagagttactcaaaatcttaa 178  Q
    |||| |||||||||||||| ||||| ||||||||||||| |||| ||||    
T  55203754 ggatctattgactctaagaataagtataaagagttactccaaattttaa 55203706  T

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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 130 - 231
Target Start/End: Original strand, 19990280 - 19990382
Alignment:
Q  130 ggatatattgactctaagagtaagtctaaagagttactcaaaatcttaa-tctttatcttaataataattaatggttataattgattcttaatagtccct 228  Q
    |||||||||||||| ||||||||||||||||| |||||| |||||| ||  ||| |||||||||||||||||||| || |||||||| |||||| |||||    
T  19990280 ggatatattgactccaagagtaagtctaaagacttactccaaatctaaacccttcatcttaataataattaatggctaaaattgatttttaataatccct 19990379  T
Q  229 atg 231  Q
    |||    
T  19990380 atg 19990382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 115 - 231
Target Start/End: Complemental strand, 16073382 - 16073268
Alignment:
Q  115 tatatatataaggaaggatatattgactctaagagtaagtctaaagagttactcaaaatcttaa-tctttatcttaataataattaatggttataattga 213  Q
    |||||||||| |||| ||||||||||||| ||||||||||||||||| ||| || |||||| ||  ||| ||||   ||||||||||||| |||||||||    
T  16073382 tatatatatagggaaagatatattgactccaagagtaagtctaaagacttattccaaatctaaacccttcatct---taataattaatggctataattga 16073286  T
Q  214 ttcttaatagtccctatg 231  Q
    ||||||||| | ||||||    
T  16073285 ttcttaataatacctatg 16073268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 125 - 202
Target Start/End: Complemental strand, 19991100 - 19991023
Alignment:
Q  125 aggaaggatatattgactctaagagtaagtctaaagagttactcaaaatcttaatctttatcttaataataattaatg 202  Q
    |||| |||||||||||||| |||||||| || |||||||||||| ||||||||| | || |||||| |||||||||||    
T  19991100 aggagggatatattgactccaagagtaactcaaaagagttactccaaatcttaacccttgtcttaaaaataattaatg 19991023  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 130 - 230
Target Start/End: Original strand, 28313844 - 28313945
Alignment:
Q  130 ggatatattgactctaagagtaagtctaaagagttactcaaaatctt-aatctttatcttaataataattaatggttataattgattcttaatagtccct 228  Q
    |||||| ||||||| |||||||| || |||||||||||| ||||||| |  ||| ||| ||||| |||||||||| |||||||||||||||||  |||||    
T  28313844 ggatattttgactccaagagtaactcaaaagagttactccaaatcttgacccttcatcctaatattaattaatggctataattgattcttaatcatccct 28313943  T
Q  229 at 230  Q
    ||    
T  28313944 at 28313945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 115 - 173
Target Start/End: Complemental strand, 16386384 - 16386326
Alignment:
Q  115 tatatatataaggaaggatatattgactctaagagtaagtctaaagagttactcaaaat 173  Q
    |||||||||  ||| |||||| |||||||||||||||| ||||||||||||||| ||||    
T  16386384 tatatatatggggagggatattttgactctaagagtaactctaaagagttactccaaat 16386326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 20008229 - 20008282
Alignment:
Q  115 tatatatataaggaaggatatattgactctaagagtaagtctaaagagttactc 168  Q
    ||||||||| |||| |||||||||||||| ||||||||||||||||||||||||    
T  20008229 tatatatatgaggagggatatattgactccaagagtaagtctaaagagttactc 20008282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 115 - 168
Target Start/End: Complemental strand, 20009148 - 20009094
Alignment:
Q  115 tatatatata-aggaaggatatattgactctaagagtaagtctaaagagttactc 168  Q
    |||||||||| |||| |||||||||||||| ||||||||||||||||||||||||    
T  20009148 tatatatatataggagggatatattgactccaagagtaagtctaaagagttactc 20009094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 20123319 - 20123283
Alignment:
Q  132 atatattgactctaagagtaagtctaaagagttactc 168  Q
    |||||||||||| ||||||||||||||||||||||||    
T  20123319 atatattgactccaagagtaagtctaaagagttactc 20123283  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 168
Target Start/End: Original strand, 29525111 - 29525149
Alignment:
Q  130 ggatatattgactctaagagtaagtctaaagagttactc 168  Q
    |||||||||||||| |||||||| |||||||||||||||    
T  29525111 ggatatattgactccaagagtaactctaaagagttactc 29525149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 168
Target Start/End: Complemental strand, 34167268 - 34167226
Alignment:
Q  126 ggaaggatatattgactctaagagtaagtctaaagagttactc 168  Q
    |||||||||||||||||| |||||||| ||||| |||||||||    
T  34167268 ggaaggatatattgactccaagagtaactctaaggagttactc 34167226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 203
Target Start/End: Original strand, 22709448 - 22709521
Alignment:
Q  130 ggatatattgactctaagagtaagtctaaagagttactcaaaatcttaatctttatcttaataataattaatgg 203  Q
    |||| ||||||||| |||||||||| ||||||||||||| ||||| | | ||| | ||||||| ||||| ||||    
T  22709448 ggatctattgactccaagagtaagtgtaaagagttactctaaatcatgaccttcaacttaatagtaattgatgg 22709521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 19156222 - 19156258
Alignment:
Q  125 aggaaggatatattgactctaagagtaagtctaaaga 161  Q
    |||| |||||||||||||| |||||||||||||||||    
T  19156222 aggagggatatattgactccaagagtaagtctaaaga 19156258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 20755621 - 20755657
Alignment:
Q  125 aggaaggatatattgactctaagagtaagtctaaaga 161  Q
    |||| |||||||||||||| |||||||||||||||||    
T  20755621 aggagggatatattgactccaagagtaagtctaaaga 20755657  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 23237030 - 23237083
Alignment:
Q  115 tatatatataaggaaggatatattgactctaagagtaagtctaaagagttactc 168  Q
    ||||||||| |||| |||||||||||||| ||||||||||||||||||||||||    
T  23237030 tatatatatgaggagggatatattgactccaagagtaagtctaaagagttactc 23237083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 10555367 - 10555421
Alignment:
Q  115 tatatatata-aggaaggatatattgactctaagagtaagtctaaagagttactc 168  Q
    |||||||||| |||| |||||||||||||| ||||||||||||||||||||||||    
T  10555367 tatatatatataggagggatatattgactccaagagtaagtctaaagagttactc 10555421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 168
Target Start/End: Complemental strand, 10556309 - 10556256
Alignment:
Q  115 tatatatataaggaaggatatattgactctaagagtaagtctaaagagttactc 168  Q
    ||||||||| |||| |||||||||||||| |||| |||||||||||||||||||    
T  10556309 tatatatatgaggagggatatattgactccaagactaagtctaaagagttactc 10556256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 168
Target Start/End: Original strand, 33766484 - 33766527
Alignment:
Q  125 aggaaggatatattgactctaagagtaagtctaaagagttactc 168  Q
    |||| |||||||||||||| ||||||||||||||||||||||||    
T  33766484 aggagggatatattgactccaagagtaagtctaaagagttactc 33766527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 168
Target Start/End: Original strand, 42994476 - 42994519
Alignment:
Q  125 aggaaggatatattgactctaagagtaagtctaaagagttactc 168  Q
    |||| |||||||||||||| ||||||||||||||||||||||||    
T  42994476 aggagggatatattgactccaagagtaagtctaaagagttactc 42994519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 115 - 168
Target Start/End: Complemental strand, 3957277 - 3957223
Alignment:
Q  115 tatatatataaggaag-gatatattgactctaagagtaagtctaaagagttactc 168  Q
    |||||||||| ||||| ||||| |||||||||||||||| |||||||||||||||    
T  3957277 tatatatatagggaagagatattttgactctaagagtaactctaaagagttactc 3957223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 168
Target Start/End: Complemental strand, 23244403 - 23244365
Alignment:
Q  130 ggatatattgactctaagagtaagtctaaagagttactc 168  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  23244403 ggatatattgactccaagagtaagtctaaagagttactc 23244365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 168
Target Start/End: Complemental strand, 33767391 - 33767348
Alignment:
Q  125 aggaaggatatattgactctaagagtaagtctaaagagttactc 168  Q
    |||| |||||||||||||| |||||||||| |||||||||||||    
T  33767391 aggagggatatattgactccaagagtaagtttaaagagttactc 33767348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 178
Target Start/End: Original strand, 19186444 - 19186486
Alignment:
Q  136 attgactctaagagtaagtctaaagagttactcaaaatcttaa 178  Q
    |||||||| ||||||||||||||||| |||||| |||||||||    
T  19186444 attgactccaagagtaagtctaaagacttactccaaatcttaa 19186486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 3956355 - 3956408
Alignment:
Q  115 tatatatataaggaaggatatattgactctaagagtaagtctaaagagttactc 168  Q
    |||||||||  |||||||||||||||||  |||||||| ||||| |||||||||    
T  3956355 tatatatatggggaaggatatattgacttcaagagtaactctaaggagttactc 3956408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 168
Target Start/End: Complemental strand, 42948216 - 42948184
Alignment:
Q  136 attgactctaagagtaagtctaaagagttactc 168  Q
    |||||||| ||||||||||||||||||||||||    
T  42948216 attgactccaagagtaagtctaaagagttactc 42948184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 230
Target Start/End: Original strand, 29156141 - 29156257
Alignment:
Q  115 tatatatataaggaaggatatattgactctaagagtaagtctaaagagttactcaaaat-cttaatctttatcttaataataattaatggttataattga 213  Q
    |||||||||  ||| |||||| ||||||| |||||||| || |||||||||||| |||| || |  ||| ||| ||||| |||||||||| |||||||||    
T  29156141 tatatatatggggagggatattttgactccaagagtaactcaaaagagttactccaaatcctgacccttcatcctaatattaattaatggctataattga 29156240  T
Q  214 ttcttaatagtccctat 230  Q
    ||||||||  |||||||    
T  29156241 ttcttaatcatccctat 29156257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 174
Target Start/End: Complemental strand, 8194314 - 8194276
Alignment:
Q  136 attgactctaagagtaagtctaaagagttactcaaaatc 174  Q
    |||||||| |||||||||||||||||||||||| |||||    
T  8194314 attgactccaagagtaagtctaaagagttactccaaatc 8194276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 24121384 - 24121438
Alignment:
Q  115 tatatatataaggaa-ggatatattgactctaagagtaagtctaaagagttactc 168  Q
    |||||||||| |||| |||||| ||||||| |||||||| |||||||||||||||    
T  24121384 tatatatatagggaatggatattttgactccaagagtaactctaaagagttactc 24121438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 26233837 - 26233891
Alignment:
Q  115 tatatatata-aggaaggatatattgactctaagagtaagtctaaagagttactc 168  Q
    |||||||||| |||| |||||||||||||| |||||||||| ||||||| |||||    
T  26233837 tatatatatataggagggatatattgactccaagagtaagtataaagagctactc 26233891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 168
Target Start/End: Complemental strand, 26234933 - 26234880
Alignment:
Q  115 tatatatataaggaaggatatattgactctaagagtaagtctaaagagttactc 168  Q
    |||||||||||||| |||||||||||||  |||||||||| |||| || |||||    
T  26234933 tatatatataaggagggatatattgacttcaagagtaagtataaaaagctactc 26234880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 122 - 168
Target Start/End: Original strand, 25344842 - 25344888
Alignment:
Q  122 ataaggaaggatatattgactctaagagtaagtctaaagagttactc 168  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||    
T  25344842 ataaggagggatatattgactccaagagtaagtctaaagagttactc 25344888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 168
Target Start/End: Complemental strand, 25345655 - 25345612
Alignment:
Q  125 aggaaggatatattgactctaagagtaagtctaaagagttactc 168  Q
    |||| |||||||||||||| |||||||||| |||||||||||||    
T  25345655 aggagggatatattgactccaagagtaagtgtaaagagttactc 25345612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 168
Target Start/End: Complemental strand, 21777900 - 21777859
Alignment:
Q  127 gaaggatatattgactctaagagtaagtctaaagagttactc 168  Q
    ||||||||| ||||||| |||||||| |||||||||||||||    
T  21777900 gaaggatattttgactccaagagtaactctaaagagttactc 21777859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 175
Target Start/End: Original strand, 4485959 - 4486003
Alignment:
Q  131 gatatattgactctaagagtaagtctaaagagttactcaaaatct 175  Q
    ||||||||||||| |||||||| |||||||||||| | |||||||    
T  4485959 gatatattgactccaagagtaactctaaagagttatttaaaatct 4486003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 180
Target Start/End: Original strand, 8038763 - 8038825
Alignment:
Q  117 tatatataaggaaggatatattgactctaagagtaagtctaaagagttactcaaaatcttaatc 180  Q
    ||||||| ||||  ||||||||||||| |||||||| ||||||||||||||| |||||||||||    
T  8038763 tatatatgaggagagatatattgactc-aagagtaaatctaaagagttactccaaatcttaatc 8038825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 18684296 - 18684349
Alignment:
Q  115 tatatatataaggaaggatatattgactctaagagtaagtctaaagagttactc 168  Q
    ||||||||| || | |||||||||||||| |||| |||||||||| ||||||||    
T  18684296 tatatatatgagtagggatatattgactccaagaataagtctaaaaagttactc 18684349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 18729861 - 18729914
Alignment:
Q  115 tatatatataaggaaggatatattgactctaagagtaagtctaaagagttactc 168  Q
    ||||||||| || | |||||||||||||| |||| |||||||||| ||||||||    
T  18729861 tatatatatgagtagggatatattgactccaagaataagtctaaaaagttactc 18729914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 42269356 - 42269409
Alignment:
Q  115 tatatatataaggaaggatatattgactctaagagtaagtctaaagagttactc 168  Q
    ||||||||| |||| |||||| ||||||| |||||||| || ||||||||||||    
T  42269356 tatatatatgaggagggatattttgactccaagagtaactcaaaagagttactc 42269409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 168
Target Start/End: Complemental strand, 21436306 - 21436269
Alignment:
Q  131 gatatattgactctaagagtaagtctaaagagttactc 168  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  21436306 gatatattgactctaagagtaagtctaaaaagttactc 21436269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 43416576 - 43416629
Alignment:
Q  115 tatatatataaggaaggatatattgactctaagagtaagtctaaagagttactc 168  Q
    |||||||||||| |||||||||||||||| |||||||| || | ||||||||||    
T  43416576 tatatatataagaaaggatatattgactccaagagtaactcaatagagttactc 43416629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 168
Target Start/End: Original strand, 38977496 - 38977547
Alignment:
Q  117 tatatataaggaaggatatattgactctaagagtaagtctaaagagttactc 168  Q
    |||||||  |||||||||||||||||| |||||||| ||||| |||||||||    
T  38977496 tatatatggggaaggatatattgactccaagagtaactctaaggagttactc 38977547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 24195570 - 24195624
Alignment:
Q  115 tatatatataaggaag-gatatattgactctaagagtaagtctaaagagttactc 168  Q
    |||||||||| || || ||||||||||||| |||||||| |||||||||||||||    
T  24195570 tatatatataggggagagatatattgactccaagagtaactctaaagagttactc 24195624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 168
Target Start/End: Complemental strand, 11311525 - 11311472
Alignment:
Q  115 tatatatataaggaaggatatattgactctaagagtaagtctaaagagttactc 168  Q
    ||||||||| |||| |||||| ||||||| |||||||| || ||||||||||||    
T  11311525 tatatatatgaggagggatattttgactccaagagtaactcaaaagagttactc 11311472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 168
Target Start/End: Original strand, 21435406 - 21435442
Alignment:
Q  132 atatattgactctaagagtaagtctaaagagttactc 168  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  21435406 atatattgactctaagaataagtttaaagagttactc 21435442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 168
Target Start/End: Complemental strand, 34089 - 34047
Alignment:
Q  126 ggaaggatatattgactctaagagtaagtctaaagagttactc 168  Q
    |||||||||||||||||| |||||||| ||||| |||||||||    
T  34089 ggaaggatatattgactccaagagtaactctaaggagttactc 34047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0548 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 6877 - 6930
Alignment:
Q  115 tatatatataaggaaggatatattgactctaagagtaagtctaaagagttactc 168  Q
    ||||||||| |||| |||||| ||||||| |||||||| || ||||||||||||    
T  6877 tatatatatgaggagggatattttgactccaagagtaactcaaaagagttactc 6930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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