View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11660_low_48 (Length: 238)
Name: NF11660_low_48
Description: NF11660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11660_low_48 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 36718303 - 36718080
Alignment:
| Q |
1 |
taactttaaattaaattcaagcttacgcaagcaaaatgatggaccataatcatgcatgttttttgtccatccctgcattgctctcaagatcatcatatac |
100 |
Q |
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| T |
36718303 |
taactttaaattaaattcaagcttacgcaagcaaaatgatggaccataatcatgcatgttttt-gtccatccctgcattgctctcaagataatcatatac |
36718205 |
T |
|
| Q |
101 |
atgcattttaccttgttgtttgcgtaagctttttgtacctttgtctttttaatctaacatgtaatcttaaagattacagataatgatc-aaatattaggc |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
36718204 |
atgcattttaccttgttgtttgcgtaagctttttgtacctttgtctttttaatctaacatgtaatcttaaagattacagataatgatcaaaatattaggc |
36718105 |
T |
|
| Q |
200 |
taaattacaaaatgcagaggaaggt |
224 |
Q |
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||||||||||||||||||||||||| |
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| T |
36718104 |
taaattacaaaatgcagaggaaggt |
36718080 |
T |
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