View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11660_low_49 (Length: 233)
Name: NF11660_low_49
Description: NF11660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11660_low_49 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 427527 - 427295
Alignment:
| Q |
1 |
taaaacgattttctatcattcgttttgttgtgaatgtgttggtgaaagagaaggttgaagatggaatggaaggatagtgggtttgttcatctttttatag |
100 |
Q |
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| T |
427527 |
taaaacgattttctatcattcgttttgttgtgaatgtgttggtgaaagagaaggttgaagatggaatggaaggatagtgggtttgttcatctttttatag |
427428 |
T |
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| Q |
101 |
ccaattttcttttttccttcaagcataggatgctctacacgatgcttaaacgaaaattagagattacacggtacaagcatgtgattgtatttgttgtgtt |
200 |
Q |
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| T |
427427 |
ccaattttcttttttccttcaagcataggatgctctacatgatgcttaaacgaaaattagagattacacggtacaagcatgtgattgtatttgttgtgtt |
427328 |
T |
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| Q |
201 |
gccaaaaattgcataagtaaatggtactactaa |
233 |
Q |
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||||||||||||||| ||||||||||||||||| |
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| T |
427327 |
gccaaaaattgcatacgtaaatggtactactaa |
427295 |
T |
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