View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11660_low_51 (Length: 227)
Name: NF11660_low_51
Description: NF11660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11660_low_51 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 9 - 211
Target Start/End: Original strand, 2146304 - 2146506
Alignment:
| Q |
9 |
gagaagcataggagtgatttcatcttttttggaagttgaatgctttgataccaaaggtgaagataagtgcaaacaacactgagaaactaaccacaacaat |
108 |
Q |
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| T |
2146304 |
gagaagcattggagtgatttcatcttttttggaagttgaatgctttgataccaaaggtgaagataagtgcaaacaacactgagaaactaaccacaacaat |
2146403 |
T |
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| Q |
109 |
tgcaaccactcctaggaagtcatgttcaaaaccaaagtaattcctaacaaattcttcaacactttgaccattatcaagtgtgtccatgttgtgtccatat |
208 |
Q |
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| T |
2146404 |
tgcaaccactcctaggaagtcatattcaaaaccaaagtaattcctaacaaattcttcaacactttgaccattatcaagtgtgtccatgttgtgtccatat |
2146503 |
T |
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| Q |
209 |
tgg |
211 |
Q |
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||| |
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| T |
2146504 |
tgg |
2146506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 24 - 210
Target Start/End: Original strand, 2157784 - 2157970
Alignment:
| Q |
24 |
gatttcatcttttttggaagttgaatgctttgataccaaaggtgaagataagtgcaaacaacactgagaaactaaccacaacaattgcaaccactcctag |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2157784 |
gatttcatcttttttggaagttgaatgctttgataccaaaggtgaagataagtgcaaagaacactgagaaactaaccacaacaattgcaaccactcctag |
2157883 |
T |
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| Q |
124 |
gaagtcatgttcaaaaccaaagtaattcctaacaaattcttcaacactttgaccattatcaagtgtgtccatgttgtgtccatattg |
210 |
Q |
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| T |
2157884 |
gaagtcatgttcaaaaccaaagtaactcttaacaaattcttcaaccctttgaccattctcaagtttctgcatgttgtctccatattg |
2157970 |
T |
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