View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11660_low_53 (Length: 216)
Name: NF11660_low_53
Description: NF11660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11660_low_53 |
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| [»] scaffold0651 (1 HSPs) |
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Alignment Details
Target: scaffold0651 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 12 - 198
Target Start/End: Original strand, 3671 - 3857
Alignment:
| Q |
12 |
agagatgaataatctttgggaacaaaatagtttcctttctcgagaacaaccactttgtagccagattttgataggacagaagctgctacacctcctccac |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
3671 |
agagatgaataatctttgggaacaaaatagtttcctttctcgagaacaaccactttgtagccagcttttgataggacagaagctgctacacctcctccac |
3770 |
T |
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| Q |
112 |
agccagaaccaacaactactgcatcacatttgattttgaggatgttgtttttggagtcaagtgtaacattgaggcctttgttagata |
198 |
Q |
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| T |
3771 |
agccagaaccaacaactactgcatcacatttgattttgaggatgttgtttttggagtcaagtgtaacattgaggcctttgttagata |
3857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 12 - 198
Target Start/End: Complemental strand, 31319999 - 31319813
Alignment:
| Q |
12 |
agagatgaataatctttgggaacaaaatagtttcctttctcgagaacaaccactttgtagccagattttgataggacagaagctgctacacctcctccac |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
31319999 |
agagatgaataatctttgggaacaaaatagtttcctttctcgagaacaaccactttgtagccagcttttgataggacagaagctgctacacctcctccac |
31319900 |
T |
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| Q |
112 |
agccagaaccaacaactactgcatcacatttgattttgaggatgttgtttttggagtcaagtgtaacattgaggcctttgttagata |
198 |
Q |
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| T |
31319899 |
agccagaaccaacaactactgcatcacatttgattttgaggatgttgtttttggagtcaagtgtaacattgaggcctttgttagata |
31319813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 12 - 198
Target Start/End: Complemental strand, 31332252 - 31332066
Alignment:
| Q |
12 |
agagatgaataatctttgggaacaaaatagtttcctttctcgagaacaaccactttgtagccagattttgataggacagaagctgctacacctcctccac |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
31332252 |
agagatgaataatctttgggaacaaaatagtttcctttctcgagaacaaccactttgtagccagcttttgataggacagaagctgctacacctcctccac |
31332153 |
T |
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| Q |
112 |
agccagaaccaacaactactgcatcacatttgattttgaggatgttgtttttggagtcaagtgtaacattgaggcctttgttagata |
198 |
Q |
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| T |
31332152 |
agccagaaccaacaactactgcatcacatttgattttgaggatgttgtttttggagtcaagtgtaacattgaggcctttgttagata |
31332066 |
T |
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