View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11660_low_8 (Length: 468)
Name: NF11660_low_8
Description: NF11660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11660_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 6 - 450
Target Start/End: Complemental strand, 26621634 - 26621190
Alignment:
| Q |
6 |
agcagagagatgccttgtaatacaagctacttgtgctagttagcatcttggctcaaccataggcttgttatgggcattagcatagagtagcataacttta |
105 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
26621634 |
agcatagagatgccttgtaatacaagctacttgtgctagttagcatcttggctcaaccataggcttgttatgagcattagcatagagtagcataacttta |
26621535 |
T |
|
| Q |
106 |
tattttctattgtgttcactcggcattcagcaaggttatcagaagttagtttcatagattagttagagtttgttagactcgagctataaatatctccttg |
205 |
Q |
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| T |
26621534 |
tcttttctattgtgttgactcgacattcagcaaggttatcagaagttagtttcatagattagttagagtttgttagactcgagctataaatatctccttg |
26621435 |
T |
|
| Q |
206 |
atcttcagtgtgagttactgcctcaatcaaggatctagatttgtttttaaattttttactgctctcgataaactttcagaagaacttgaatcttaccttc |
305 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26621434 |
atcttcagtgtgagttactacctcaatcaaggatctagatttgtttttaaattttttactgctctcgataaactttcagaagaacttgaatcttaccttc |
26621335 |
T |
|
| Q |
306 |
ttacacttgtttgtggatgtccaatgtgtagtgtttgtgctgctctgagaccgcatcaattaggtgaacgattgctgcttccctagtctgaatcatctgg |
405 |
Q |
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||||||| ||||||||||||||||||||||| ||||||||||||||| |||||| ||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
26621334 |
ttacactagtttgtggatgtccaatgtgtagcgtttgtgctgctctgcgaccgcgtcaatgaggtgaatgattgctgcttccctagtctgaatcatctgg |
26621235 |
T |
|
| Q |
406 |
aggtttgttgcctcctcctcgacgcgacttcatcggaatcgaaac |
450 |
Q |
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|||||||| |||||||||||||||| |||||||| |||||||||| |
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| T |
26621234 |
aggtttgtcgcctcctcctcgacgcaacttcatcagaatcgaaac |
26621190 |
T |
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