View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11661_high_11 (Length: 419)
Name: NF11661_high_11
Description: NF11661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11661_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 17 - 407
Target Start/End: Complemental strand, 2764929 - 2764510
Alignment:
| Q |
17 |
actaaaacttccaataactaccacaattaattnnnnnnn-taaacaacggttactcaaataaaaatatccaacacataatacataaagactccaact--- |
112 |
Q |
| |
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|||||||||||||||||||| ||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||| | |
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| T |
2764929 |
actaaaacttccaataactatcacaattaattaaaaaaaataaacaacagttactgaaataaaaatatccaacacataatacataaagactccacatagc |
2764830 |
T |
|
| Q |
113 |
--tcctaatcatgatagtgttatttatttcttccacttgctcttttctttttctt------aaatcctcctctcctttcctctcatgtctcgcaaataaa |
204 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
2764829 |
agtcctaatcatgatagtgttatttatttcttccacttgctcttttctttttctttttctcaagtcctcctctcctttcctctcatgtctcgcaaataaa |
2764730 |
T |
|
| Q |
205 |
gccataagtttggcacatatttttatttacctcaatgaaaggtggatatagttatctttattggggagttgacatcaataaaaaatcatacagttatcca |
304 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2764729 |
gccataagtttggcacatatttttatttacctcaatgaaaggtggatatagttatctatattggggagttgacatcaataaaaaatcatacagttatcca |
2764630 |
T |
|
| Q |
305 |
actttttcttttgcgttaatccttaggtttc-----------------taagtcgaagtttgtcgtccatgaggtaagaatagcctgaccaagtattgtt |
387 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| || |
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| T |
2764629 |
cctttttcttttgcgttaatccttaggtttctaggagaaagaaccctataagtcgaagtttgccgtccatgaggtaagaatagcctgaccaagtattatt |
2764530 |
T |
|
| Q |
388 |
acacccacatatcgtattca |
407 |
Q |
| |
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|||||||||| ||||||||| |
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| T |
2764529 |
acacccacatgtcgtattca |
2764510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 17 - 406
Target Start/End: Complemental strand, 2802078 - 2801663
Alignment:
| Q |
17 |
actaaaacttccaataactaccacaattaattnnnnnnntaaacaacggttactcaaataaaaatatccaacacataatacataaagactccaact---- |
112 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||| || |||||| |||||||||||||||||||||||||||||||||||||| | |
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|
| T |
2802078 |
actaaaacttccgataactaccacaattaatttaaaaaataaaaaaaagttactaaaataaaaatatccaacacataatacataaagactccacatcagc |
2801979 |
T |
|
| Q |
113 |
--tcctaatcatgatagtgttatttatttcttccacttgctcttttctttttcttaaatcctcctctcctttcctctcatgtctcgcaaataaagccata |
210 |
Q |
| |
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|||||| |||||||||||||||| |||||| |||||| ||||||||||||| || |||||| ||||||||||||| |||| ||||||||||||| | |
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| T |
2801978 |
agtcctaagcatgatagtgttatttttttctttcacttgttcttttctttttccaaagtcctcccctcctttcctctcttgtcccgcaaataaagcctaa |
2801879 |
T |
|
| Q |
211 |
agtttggcacatatttttatttacc--tcaatgaaaggtggatatagttatctttattggggagttgacatcaataaaaaa-tcatacagttatccaact |
307 |
Q |
| |
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||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| | | |
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|
| T |
2801878 |
agtttggcacatatttttatttacccatcaataaaaggtggatatagttatctatattggggagttgacatcaataaaaaattcatacagttatcaactt |
2801779 |
T |
|
| Q |
308 |
ttttcttttgcgttaatccttaggtt-----------------tctaagtcgaagtttgtcgtccatgaggtaagaatagcctgaccaagtattgttaca |
390 |
Q |
| |
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|||||||||| ||||||||||||||| | ||||||||||||||||| ||||||||||| |||||| |||||||| ||||||||| |
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| T |
2801778 |
ttttcttttgtgttaatccttaggtttataggagaaagaaccatgtaagtcgaagtttgtcgcccatgaggtaaaaatagcttgaccaagaattgttaca |
2801679 |
T |
|
| Q |
391 |
cccacatatcgtattc |
406 |
Q |
| |
|
|||||| |||| |||| |
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|
| T |
2801678 |
cccacaaatcgaattc |
2801663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 11634307 - 11634263
Alignment:
| Q |
65 |
gttactcaaataaaaatatccaacacataatacataaagactcca |
109 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||||| ||||||| |
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|
| T |
11634307 |
gttactaaaataaaaataaccaacacataatacataatgactcca |
11634263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 8978302 - 8978333
Alignment:
| Q |
17 |
actaaaacttccaataactaccacaattaatt |
48 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
8978302 |
actaaaacttccaataactaccacaattaatt |
8978333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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