View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11661_high_15 (Length: 341)

Name: NF11661_high_15
Description: NF11661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11661_high_15
NF11661_high_15
[»] chr8 (9 HSPs)
chr8 (99-296)||(33303905-33304119)
chr8 (15-108)||(33303284-33303377)
chr8 (300-341)||(13924025-13924066)
chr8 (300-334)||(4148689-4148723)
chr8 (300-341)||(6243048-6243089)
chr8 (300-341)||(36675339-36675380)
chr8 (300-341)||(37471657-37471698)
chr8 (300-341)||(41776189-41776230)
chr8 (300-341)||(43590708-43590749)
[»] chr2 (8 HSPs)
chr2 (288-338)||(27538935-27538985)
chr2 (294-341)||(38598365-38598412)
chr2 (300-341)||(11828836-11828877)
chr2 (295-341)||(24727424-24727470)
chr2 (300-341)||(43076313-43076354)
chr2 (294-335)||(44897623-44897664)
chr2 (300-341)||(45202148-45202189)
chr2 (300-340)||(22296146-22296186)
[»] chr7 (5 HSPs)
chr7 (292-334)||(45335857-45335899)
chr7 (294-339)||(25272599-25272644)
chr7 (293-341)||(37848636-37848684)
chr7 (294-341)||(33465055-33465102)
chr7 (295-341)||(27866553-27866599)
[»] chr4 (9 HSPs)
chr4 (295-341)||(24310537-24310583)
chr4 (293-341)||(7795021-7795069)
chr4 (289-341)||(28899231-28899283)
chr4 (286-341)||(1868909-1868964)
chr4 (300-341)||(9827999-9828040)
chr4 (300-341)||(21766561-21766602)
chr4 (300-341)||(31413802-31413843)
chr4 (295-340)||(36871185-36871230)
chr4 (300-341)||(54848152-54848193)
[»] chr6 (4 HSPs)
chr6 (293-338)||(16121159-16121204)
chr6 (300-341)||(2165316-2165357)
chr6 (300-341)||(2176949-2176990)
chr6 (300-340)||(17442836-17442876)
[»] chr5 (5 HSPs)
chr5 (300-341)||(12203161-12203202)
chr5 (300-340)||(38387613-38387653)
chr5 (305-338)||(6458787-6458820)
chr5 (300-341)||(43153076-43153117)
chr5 (293-341)||(21210826-21210874)
[»] chr3 (6 HSPs)
chr3 (293-334)||(17118393-17118434)
chr3 (300-341)||(29057662-29057703)
chr3 (300-341)||(29846907-29846948)
chr3 (300-341)||(35368625-35368666)
chr3 (300-341)||(48490529-48490570)
chr3 (300-341)||(50745563-50745604)
[»] chr1 (6 HSPs)
chr1 (295-338)||(16252778-16252821)
chr1 (288-338)||(30596714-30596764)
chr1 (300-341)||(30414878-30414919)
chr1 (300-341)||(35030778-35030819)
chr1 (300-341)||(50460728-50460769)
chr1 (295-335)||(12990502-12990542)
[»] scaffold0286 (1 HSPs)
scaffold0286 (300-341)||(17052-17093)


Alignment Details
Target: chr8 (Bit Score: 88; Significance: 3e-42; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 99 - 296
Target Start/End: Original strand, 33303905 - 33304119
Alignment:
Q  99 tatttgtaagcataatttggaccaatcgtatgacactttattatttgta----------------gcgtgaaactacagtgggatgttgatatatatgtt 182  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||                |||||||||||||||||||||||||||||||||||    
T  33303905 tatttgtaagcataattttgaccaatcgtatgacactttattatttgtatctaaattaatttgtagcgtgaaactacagtgggatgttgatatatatgtt 33304004  T
Q  183 gtggcttgaaata---gtgtaagttct-ttctgtgtacataatatgatagagactagataagattagaaaatgaataaagatagatatatgatcgtgatg 278  Q
    |||| | ||||||   | ||||| ||  ||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||    
T  33304005 gtggttggaaataaaagcgtaaggtccgttcggtgtacata-tatgatagagactagataagattagaaaatggataaagatag--atatgatcgtgatg 33304101  T
Q  279 gatatacatttattatat 296  Q
    |||| |||||||||||||    
T  33304102 gatagacatttattatat 33304119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 15 - 108
Target Start/End: Original strand, 33303284 - 33303377
Alignment:
Q  15 aataagttggaccaagagctaatttttgcaagtcttaagtttggtcaactaaataaattaagatatnnnnnnnnntctcatttttatttgtaag 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||    
T  33303284 aataagttggaccaagagctaatttttgcaagtcttaagtttggtcaactaaataaattaagatattaaaagaaatctcatttttatttgtaag 33303377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 300 - 341
Target Start/End: Original strand, 13924025 - 13924066
Alignment:
Q  300 aaatgatatttgcataaccatttttgtacaactttctctctc 341  Q
    |||||||||||| | |||||||||||||||||||||||||||    
T  13924025 aaatgatatttgtacaaccatttttgtacaactttctctctc 13924066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 334
Target Start/End: Complemental strand, 4148723 - 4148689
Alignment:
Q  300 aaatgatatttgcataaccatttttgtacaacttt 334  Q
    |||||||||||| ||||||||||||||||||||||    
T  4148723 aaatgatatttgtataaccatttttgtacaacttt 4148689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 341
Target Start/End: Original strand, 6243048 - 6243089
Alignment:
Q  300 aaatgatatttgcataaccatttttgtacaactttctctctc 341  Q
    |||||||||||| | || ||||||||||||||||||||||||    
T  6243048 aaatgatatttgtacaatcatttttgtacaactttctctctc 6243089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 341
Target Start/End: Original strand, 36675339 - 36675380
Alignment:
Q  300 aaatgatatttgcataaccatttttgtacaactttctctctc 341  Q
    |||||||||||| | |||||||||||||||||||| ||||||    
T  36675339 aaatgatatttgtacaaccatttttgtacaactttttctctc 36675380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 341
Target Start/End: Original strand, 37471657 - 37471698
Alignment:
Q  300 aaatgatatttgcataaccatttttgtacaactttctctctc 341  Q
    |||||||||||| | || ||||||||||||||||||||||||    
T  37471657 aaatgatatttgtacaatcatttttgtacaactttctctctc 37471698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 341
Target Start/End: Original strand, 41776189 - 41776230
Alignment:
Q  300 aaatgatatttgcataaccatttttgtacaactttctctctc 341  Q
    |||||||||||| | ||| |||||||||||||||||||||||    
T  41776189 aaatgatatttgtacaactatttttgtacaactttctctctc 41776230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 341
Target Start/End: Original strand, 43590708 - 43590749
Alignment:
Q  300 aaatgatatttgcataaccatttttgtacaactttctctctc 341  Q
    |||||||||||| |||| |||||||||| |||||||||||||    
T  43590708 aaatgatatttgtataatcatttttgtataactttctctctc 43590749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 288 - 338
Target Start/End: Complemental strand, 27538985 - 27538935
Alignment:
Q  288 ttattatatgaaaaatgatatttgcataaccatttttgtacaactttctct 338  Q
    ||||||||||| |||||||||||| | ||||||||||||||||||||||||    
T  27538985 ttattatatgagaaatgatatttgtacaaccatttttgtacaactttctct 27538935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 294 - 341
Target Start/End: Complemental strand, 38598412 - 38598365
Alignment:
Q  294 tatgaaaaatgatatttgcataaccatttttgtacaactttctctctc 341  Q
    ||||| |||||||||||| ||||||||||||||||||| |||||||||    
T  38598412 tatgataaatgatatttgtataaccatttttgtacaaccttctctctc 38598365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 300 - 341
Target Start/End: Complemental strand, 11828877 - 11828836
Alignment:
Q  300 aaatgatatttgcataaccatttttgtacaactttctctctc 341  Q
    |||||||||||| | |||||||||||||||||||||||||||    
T  11828877 aaatgatatttgtacaaccatttttgtacaactttctctctc 11828836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 341
Target Start/End: Original strand, 24727424 - 24727470
Alignment:
Q  295 atgaaaaatgatatttgcataaccatttttgtacaactttctctctc 341  Q
    |||| |||||||||||| | ||||||||| |||||||||||||||||    
T  24727424 atgagaaatgatatttgtacaaccattttggtacaactttctctctc 24727470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 341
Target Start/End: Original strand, 43076313 - 43076354
Alignment:
Q  300 aaatgatatttgcataaccatttttgtacaactttctctctc 341  Q
    |||||||||||| |||| ||||||||||||| ||||||||||    
T  43076313 aaatgatatttgtataatcatttttgtacaattttctctctc 43076354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 335
Target Start/End: Original strand, 44897623 - 44897664
Alignment:
Q  294 tatgaaaaatgatatttgcataaccatttttgtacaactttc 335  Q
    ||||| |||||||||||| | |||||||||||||||||||||    
T  44897623 tatgagaaatgatatttgtacaaccatttttgtacaactttc 44897664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 341
Target Start/End: Complemental strand, 45202189 - 45202148
Alignment:
Q  300 aaatgatatttgcataaccatttttgtacaactttctctctc 341  Q
    |||||||||||| | |||||||||| ||||||||||||||||    
T  45202189 aaatgatatttgtacaaccatttttttacaactttctctctc 45202148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 340
Target Start/End: Complemental strand, 22296186 - 22296146
Alignment:
Q  300 aaatgatatttgcataaccatttttgtacaactttctctct 340  Q
    |||||||||||| | |||||||||||||||| |||||||||    
T  22296186 aaatgatatttgtacaaccatttttgtacaattttctctct 22296146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 334
Target Start/End: Original strand, 45335857 - 45335899
Alignment:
Q  292 tatatgaaaaatgatatttgcataaccatttttgtacaacttt 334  Q
    |||||||||||||||||||| | ||||||||||||||||||||    
T  45335857 tatatgaaaaatgatatttgtacaaccatttttgtacaacttt 45335899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 294 - 339
Target Start/End: Original strand, 25272599 - 25272644
Alignment:
Q  294 tatgaaaaatgatatttgcataaccatttttgtacaactttctctc 339  Q
    ||||| |||||||||||| | |||||||||||||||||||||||||    
T  25272599 tatgagaaatgatatttgtacaaccatttttgtacaactttctctc 25272644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 341
Target Start/End: Complemental strand, 37848684 - 37848636
Alignment:
Q  293 atatgaaaaatgatatttgcataaccatttttgtacaactttctctctc 341  Q
    |||||| |||||||||||| | || ||||||||||||||||||||||||    
T  37848684 atatgagaaatgatatttgtacaatcatttttgtacaactttctctctc 37848636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 294 - 341
Target Start/End: Complemental strand, 33465102 - 33465055
Alignment:
Q  294 tatgaaaaatgatatttgcataaccatttttgtacaactttctctctc 341  Q
    ||||| |||||||||||| | |||||||||||||||| ||||||||||    
T  33465102 tatgagaaatgatatttgtacaaccatttttgtacaattttctctctc 33465055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 341
Target Start/End: Complemental strand, 27866599 - 27866553
Alignment:
Q  295 atgaaaaatgatatttgcataaccatttttgtacaactttctctctc 341  Q
    |||| |||||||||||| | |||||||||||||||||||| ||||||    
T  27866599 atgagaaatgatatttgtacaaccatttttgtacaactttatctctc 27866553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 341
Target Start/End: Complemental strand, 24310583 - 24310537
Alignment:
Q  295 atgaaaaatgatatttgcataaccatttttgtacaactttctctctc 341  Q
    |||| |||||||||||| | |||||||||||||||||||||||||||    
T  24310583 atgagaaatgatatttgtacaaccatttttgtacaactttctctctc 24310537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 341
Target Start/End: Original strand, 7795021 - 7795069
Alignment:
Q  293 atatgaaaaatgatatttgcataaccatttttgtacaactttctctctc 341  Q
    |||||| |||||||||||| | |||||||||||||||||||||| ||||    
T  7795021 atatgagaaatgatatttgtacaaccatttttgtacaactttctttctc 7795069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 341
Target Start/End: Complemental strand, 28899283 - 28899231
Alignment:
Q  289 tattatatgaaaaatgatatttgcataaccatttttgtacaactttctctctc 341  Q
    |||||||||| |||||||||||| | || |||||| |||||||||||||||||    
T  28899283 tattatatgagaaatgatatttgtacaatcattttggtacaactttctctctc 28899231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 286 - 341
Target Start/End: Complemental strand, 1868964 - 1868909
Alignment:
Q  286 atttattatatgaaaaatgatatttgcataaccatttttgtacaactttctctctc 341  Q
    |||||| ||| || |||||||||||| | |||||||||||||||||||||| ||||    
T  1868964 atttataataagagaaatgatatttgtacaaccatttttgtacaactttctatctc 1868909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 341
Target Start/End: Complemental strand, 9828040 - 9827999
Alignment:
Q  300 aaatgatatttgcataaccatttttgtacaactttctctctc 341  Q
    |||||||||||| | ||||||||| |||||||||||||||||    
T  9828040 aaatgatatttgtacaaccattttagtacaactttctctctc 9827999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 341
Target Start/End: Original strand, 21766561 - 21766602
Alignment:
Q  300 aaatgatatttgcataaccatttttgtacaactttctctctc 341  Q
    |||||||||||| |||| |||||||||||||| |||||||||    
T  21766561 aaatgatatttgtataatcatttttgtacaaccttctctctc 21766602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 341
Target Start/End: Complemental strand, 31413843 - 31413802
Alignment:
Q  300 aaatgatatttgcataaccatttttgtacaactttctctctc 341  Q
    |||||||||||| | ||| |||||||||||||||||||||||    
T  31413843 aaatgatatttgtacaactatttttgtacaactttctctctc 31413802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 340
Target Start/End: Complemental strand, 36871230 - 36871185
Alignment:
Q  295 atgaaaaatgatatttgcataaccatttttgtacaactttctctct 340  Q
    |||| |||||||||||| | ||| ||||||||||||||||||||||    
T  36871230 atgagaaatgatatttgtacaactatttttgtacaactttctctct 36871185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 341
Target Start/End: Original strand, 54848152 - 54848193
Alignment:
Q  300 aaatgatatttgcataaccatttttgtacaactttctctctc 341  Q
    |||||||||||| | ||||||||||||||||| |||||||||    
T  54848152 aaatgatatttgtacaaccatttttgtacaaccttctctctc 54848193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 338
Target Start/End: Original strand, 16121159 - 16121204
Alignment:
Q  293 atatgaaaaatgatatttgcataaccatttttgtacaactttctct 338  Q
    |||||| |||||||||||| | ||||||||||||||||||||||||    
T  16121159 atatgagaaatgatatttgtacaaccatttttgtacaactttctct 16121204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 341
Target Start/End: Complemental strand, 2165357 - 2165316
Alignment:
Q  300 aaatgatatttgcataaccatttttgtacaactttctctctc 341  Q
    |||||||||||| | |||||||||||||||||||| ||||||    
T  2165357 aaatgatatttgtacaaccatttttgtacaactttatctctc 2165316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 341
Target Start/End: Complemental strand, 2176990 - 2176949
Alignment:
Q  300 aaatgatatttgcataaccatttttgtacaactttctctctc 341  Q
    |||||||||||| | |||||||||||||||||||| ||||||    
T  2176990 aaatgatatttgtacaaccatttttgtacaactttatctctc 2176949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 340
Target Start/End: Original strand, 17442836 - 17442876
Alignment:
Q  300 aaatgatatttgcataaccatttttgtacaactttctctct 340  Q
    |||| ||||||| | ||||||||||||||||||||||||||    
T  17442836 aaataatatttgtacaaccatttttgtacaactttctctct 17442876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 300 - 341
Target Start/End: Original strand, 12203161 - 12203202
Alignment:
Q  300 aaatgatatttgcataaccatttttgtacaactttctctctc 341  Q
    |||||||||||| | |||||||||||||||||||||||||||    
T  12203161 aaatgatatttgtacaaccatttttgtacaactttctctctc 12203202  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 340
Target Start/End: Original strand, 38387613 - 38387653
Alignment:
Q  300 aaatgatatttgcataaccatttttgtacaactttctctct 340  Q
    |||||||||||| | ||||||||||||||||||||||||||    
T  38387613 aaatgatatttgtacaaccatttttgtacaactttctctct 38387653  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 338
Target Start/End: Original strand, 6458787 - 6458820
Alignment:
Q  305 atatttgcataaccatttttgtacaactttctct 338  Q
    ||||||| ||||||||||||||||||||||||||    
T  6458787 atatttgtataaccatttttgtacaactttctct 6458820  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 341
Target Start/End: Complemental strand, 43153117 - 43153076
Alignment:
Q  300 aaatgatatttgcataaccatttttgtacaactttctctctc 341  Q
    |||||||||||| | ||| |||||||||||||||||||||||    
T  43153117 aaatgatatttgtacaacaatttttgtacaactttctctctc 43153076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 341
Target Start/End: Original strand, 21210826 - 21210874
Alignment:
Q  293 atatgaaaaatgatatttgcataaccatttttgtacaactttctctctc 341  Q
    ||||||||||||||||||| | ||||| ||||  |||||||||||||||    
T  21210826 atatgaaaaatgatatttgaacaaccactttttgacaactttctctctc 21210874  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 17118393 - 17118434
Alignment:
Q  293 atatgaaaaatgatatttgcataaccatttttgtacaacttt 334  Q
    ||||||||||||||||||| | ||||||||||||||||||||    
T  17118393 atatgaaaaatgatatttgtacaaccatttttgtacaacttt 17118434  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 300 - 341
Target Start/End: Original strand, 29057662 - 29057703
Alignment:
Q  300 aaatgatatttgcataaccatttttgtacaactttctctctc 341  Q
    |||||||||||| | |||||||||||||||||||||||||||    
T  29057662 aaatgatatttgtacaaccatttttgtacaactttctctctc 29057703  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 300 - 341
Target Start/End: Complemental strand, 29846948 - 29846907
Alignment:
Q  300 aaatgatatttgcataaccatttttgtacaactttctctctc 341  Q
    |||||||||||| | |||||||||||||||||||||||||||    
T  29846948 aaatgatatttgtacaaccatttttgtacaactttctctctc 29846907  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 341
Target Start/End: Original strand, 35368625 - 35368666
Alignment:
Q  300 aaatgatatttgcataaccatttttgtacaactttctctctc 341  Q
    |||||||||||| | ||| |||||||||||||||||||||||    
T  35368625 aaatgatatttgtacaactatttttgtacaactttctctctc 35368666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 341
Target Start/End: Complemental strand, 48490570 - 48490529
Alignment:
Q  300 aaatgatatttgcataaccatttttgtacaactttctctctc 341  Q
    |||||||||||| | ||||| |||||||||||||||||||||    
T  48490570 aaatgatatttgtacaaccacttttgtacaactttctctctc 48490529  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 341
Target Start/End: Original strand, 50745563 - 50745604
Alignment:
Q  300 aaatgatatttgcataaccatttttgtacaactttctctctc 341  Q
    |||||||||||| | || ||||||||||||||||||||||||    
T  50745563 aaatgatatttgtacaatcatttttgtacaactttctctctc 50745604  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 338
Target Start/End: Complemental strand, 16252821 - 16252778
Alignment:
Q  295 atgaaaaatgatatttgcataaccatttttgtacaactttctct 338  Q
    |||| |||||||||||| | ||||||||||||||||||||||||    
T  16252821 atgagaaatgatatttgtacaaccatttttgtacaactttctct 16252778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 338
Target Start/End: Original strand, 30596714 - 30596764
Alignment:
Q  288 ttattatatgaaaaatgatatttgcataaccatttttgtacaactttctct 338  Q
    ||||||||||| ||||||||| || | ||||||||| ||||||||||||||    
T  30596714 ttattatatgagaaatgatatatgtacaaccattttggtacaactttctct 30596764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 341
Target Start/End: Original strand, 30414878 - 30414919
Alignment:
Q  300 aaatgatatttgcataaccatttttgtacaactttctctctc 341  Q
    |||||||||||| | ||||||||||||||||| |||||||||    
T  30414878 aaatgatatttgtacaaccatttttgtacaaccttctctctc 30414919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 341
Target Start/End: Complemental strand, 35030819 - 35030778
Alignment:
Q  300 aaatgatatttgcataaccatttttgtacaactttctctctc 341  Q
    ||||| |||||| | |||||||||||||||||||||||||||    
T  35030819 aaatgttatttgtacaaccatttttgtacaactttctctctc 35030778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 341
Target Start/End: Complemental strand, 50460769 - 50460728
Alignment:
Q  300 aaatgatatttgcataaccatttttgtacaactttctctctc 341  Q
    |||||||||||| | |||||||||||||||||||||| ||||    
T  50460769 aaatgatatttgtacaaccatttttgtacaactttctttctc 50460728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 335
Target Start/End: Complemental strand, 12990542 - 12990502
Alignment:
Q  295 atgaaaaatgatatttgcataaccatttttgtacaactttc 335  Q
    |||| |||||||||||| | |||||||||||||||||||||    
T  12990542 atgagaaatgatatttgtacaaccatttttgtacaactttc 12990502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 341
Target Start/End: Original strand, 17052 - 17093
Alignment:
Q  300 aaatgatatttgcataaccatttttgtacaactttctctctc 341  Q
    |||||||||||| | |||||||||||||||||||| ||||||    
T  17052 aaatgatatttgtacaaccatttttgtacaactttatctctc 17093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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