View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11661_high_21 (Length: 257)
Name: NF11661_high_21
Description: NF11661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11661_high_21 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 27305561 - 27305314
Alignment:
| Q |
1 |
cctctaatgtgtaccacctgaatacagtttgaccaagtcaaacaccaatcttatgacaacaagaatctatccaaacgacttatagaataactcatcaccg |
100 |
Q |
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| T |
27305561 |
cctctaatgtgtgccacttgaatacagtttggccatgtcaaacaccaatcttataacaacaagaatctatccaaacgacttatagaataactcattaccg |
27305462 |
T |
|
| Q |
101 |
cgataccaattgaaacgacggcccacccaacggaagatcaaccaacaaattatttcggtgaagcaataaactatataatcagtttaccaaatttgatcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
27305461 |
tgataccaattgaaacgacggcccacccaacggtagatcaaccaacaaattatttcggtgaagcaataaactacataattagtttaccaaatttgatcaa |
27305362 |
T |
|
| Q |
201 |
gttccttaatgtacaaagttttcttgaacaagtcaacaaacctatgct |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
27305361 |
gttccttaatgtacaaagttttcttgaacaagtcaacaaatctatgct |
27305314 |
T |
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