View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11661_high_24 (Length: 251)
Name: NF11661_high_24
Description: NF11661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11661_high_24 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 1463950 - 1464200
Alignment:
| Q |
1 |
agtctggtgacctacatccctcttgatttactgaaaatcgcaatccgttatattctgagtggaaaggcatggaacaatatcttggaaaacaaggtaggtt |
100 |
Q |
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| T |
1463950 |
agtctggtgacctacatccctcttgatttactgaaaatcgcaatccgttatattctgagtggaaaggcatggaacaatatcttggaaaacaaggtaggtt |
1464049 |
T |
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| Q |
101 |
attttccttttcactttatcatttcgtcacattgttgataaggacaagcctttgtgcaactgtaaggttgtcgacttatgttcaaatattggaaataacc |
200 |
Q |
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| T |
1464050 |
attttctttttcactttatcatttcgtcacattgttgataaggacaagcctttgtgcaactgtaaggttgtcgacttatgttcaaatattggaaataacc |
1464149 |
T |
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| Q |
201 |
tatctgtttgcagggataaggccgcgtacatatctaccttgtccatactcc |
251 |
Q |
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| T |
1464150 |
tatctgtttgcagggataaggccgcgtacatatctaccttgtccatactcc |
1464200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 1495794 - 1495714
Alignment:
| Q |
16 |
atccctcttgatttactgaaaatcgcaatccgttatattctgagtggaaaggcatggaacaatatcttggaaaacaaggta |
96 |
Q |
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| T |
1495794 |
atccctcttgatttactcaaattcgcaatccgctattttctaagcgggaaggcttgggataatcttttggaaaataaggta |
1495714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 26791670 - 26791884
Alignment:
| Q |
5 |
tggtgacctacatccctcttgatttactgaaaatcgcaatccgttatattctgagtggaaaggcatggaacaatatcttggaaaacaaggtaggttatt- |
103 |
Q |
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| T |
26791670 |
tggtaacctatatccctcttgatatactcaaaattgcaatccgctatattcagagtggaaaggcatggaacaatattttggaaaacaaggtagatttttt |
26791769 |
T |
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| Q |
104 |
-ttccttttcactttatcatttcgtcacattgttgataaggacaagcctttgtgcaactgtaaggttgtcgacttatgttcaaatattggaaataaccta |
202 |
Q |
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| T |
26791770 |
atttattttcgctttatcatttggtcac---gttgataaggacgagccttggcgcaactctaaggttgttcac--atgttcaaatattggaaatagtata |
26791864 |
T |
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| Q |
203 |
tctgtttgcagggataaggc |
222 |
Q |
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| T |
26791865 |
tctgcttgtagggataaggc |
26791884 |
T |
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