View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11661_low_1 (Length: 762)
Name: NF11661_low_1
Description: NF11661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11661_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 19 - 407
Target Start/End: Complemental strand, 37323811 - 37323422
Alignment:
| Q |
19 |
aaattgttcatgagatttttactctatgtagagtggagtactttgatacaagagtacccttgacatacgtacatttacgcaaagtggaatactctgatat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37323811 |
aaattgttcatgagatttttactctatgtagagtggagtactttgatacaagagtacccttgacatacgtacatttacgcaaagtggaatactctgatat |
37323712 |
T |
|
| Q |
119 |
aagagcagtactcttgacatacggacctttgtgaatgtgcaagtcagggtctattcctatgaaattctaggaaaaattcgtagagcatttgttaaatcaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37323711 |
aagagcagtactcttgacatacggacctttgtgaatgtgcaagtcagggtctattcctatgaaattctaggaaaaattcgtagagcatttgttaaatcaa |
37323612 |
T |
|
| Q |
219 |
gattgacatgtaaggtcttaatggacaaactttttg-aaatacacttaagaaaatattgtgtacgttttgatattagagatagagtttaagattacgagt |
317 |
Q |
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|||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37323611 |
gattgatatgtaaggtcttaatggacaaactttttgaaaatacacataagaaaatattgtgtacgttttgatattagagatagagtttaagattacgagt |
37323512 |
T |
|
| Q |
318 |
cactctaataaatctgaatcttattcactctacaattgttcaagttgcaaaacacatctacttatgcacaatcttaaaagaaacttccga |
407 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37323511 |
cactctaataaatctgaatcttattcactatacaattgttcaagttgcaaaacacatctacttatgcacaatcttaaaagaaacttccga |
37323422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 477 - 667
Target Start/End: Complemental strand, 37323353 - 37323164
Alignment:
| Q |
477 |
tcgacaagttccacattggagatacttcccgcaacataagtatttatatattggaggaagggctcttggggcttgccccaaagagatatccaatttttta |
576 |
Q |
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||||||||| |||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37323353 |
tcgacaagtcccacattggagatacttctcacaacacaagtatttatatattggaggaagggctcttggggcttgccccaaagagatatccaatttttta |
37323254 |
T |
|
| Q |
577 |
aaggggagatgatgcaatcaatttcaacactacacacgtgaagacaatgatgtcgtcggggtcagatctgggcatgagtttggactaagtt |
667 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
37323253 |
aaggggagatgatgcaatcaatttcaacactacacacgtgaagacaatgatgtcgtc-aggtcggatctgggcatgagtttggactaagtt |
37323164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 248 - 346
Target Start/End: Complemental strand, 19950847 - 19950747
Alignment:
| Q |
248 |
ctttttga-aatacacttaagaaaatattgtgtacgttttgatattagagatagagtttaagattacgagtcactctaat-aaatctgaatcttattcac |
345 |
Q |
| |
|
|||||||| ||||||| ||||||||| |||||| | |||||| | |||||||||||| |||| |||||||||||||| | ||||||||||||||||||| |
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| T |
19950847 |
ctttttgagaatacacctaagaaaatgttgtgtgtggtttgatgtcagagatagagttcaagactacgagtcactctagtaaaatctgaatcttattcac |
19950748 |
T |
|
| Q |
346 |
t |
346 |
Q |
| |
|
| |
|
|
| T |
19950747 |
t |
19950747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 248 - 346
Target Start/End: Original strand, 23191084 - 23191184
Alignment:
| Q |
248 |
ctttttga-aatacacttaagaaaatattgtgtacgttttgatattagagatagagtttaagattacgagtcactctaat-aaatctgaatcttattcac |
345 |
Q |
| |
|
|||||||| |||| || |||||||| |||||| | |||||||| |||||||||||| |||| ||||||||| |||| | ||||||||||||||||||| |
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| T |
23191084 |
ctttttgagaatatacctaagaaaaggttgtgtgtggtttgatatcagagatagagttcaagactacgagtcattctagtaaaatctgaatcttattcac |
23191183 |
T |
|
| Q |
346 |
t |
346 |
Q |
| |
|
| |
|
|
| T |
23191184 |
t |
23191184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 246 - 344
Target Start/End: Original strand, 41319078 - 41319178
Alignment:
| Q |
246 |
aactttttga-aatacacttaagaaaatattgtgtacgttttgatattagagatagagtttaagattacgagtcactctaat-aaatctgaatcttattc |
343 |
Q |
| |
|
|||||||||| ||||||| |||||||| |||| || | |||||| | ||| |||||||| |||| |||||||||||||| | |||| |||||||||||| |
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|
| T |
41319078 |
aactttttgagaatacacctaagaaaaggttgtctatggtttgatgtcagaaatagagttcaagactacgagtcactctagtaaaatatgaatcttattc |
41319177 |
T |
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| Q |
344 |
a |
344 |
Q |
| |
|
| |
|
|
| T |
41319178 |
a |
41319178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 291 - 323
Target Start/End: Original strand, 23388077 - 23388109
Alignment:
| Q |
291 |
ttagagatagagtttaagattacgagtcactct |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
23388077 |
ttagagatagagtttaagattacgagtcactct |
23388109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 283 - 398
Target Start/End: Original strand, 41558216 - 41558331
Alignment:
| Q |
283 |
ttttgatattagagatagagtttaagattacgagtcactctaataaa-tctgaatcttattcactctacaattgttcaagttgcaaaacacatctactta |
381 |
Q |
| |
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||||||| | |||||||||||| |||| || ||||||||||| |||| | ||||||||||||||| | ||| |||||| | | || |||| |||||||| |
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| T |
41558216 |
ttttgatttgagagatagagtt-aagactatgagtcactctagtaaaatttgaatcttattcactattcaaaggttcaattcgtaagacacctctactta |
41558314 |
T |
|
| Q |
382 |
tgcacaatcttaaaaga |
398 |
Q |
| |
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|| ||||||||| |||| |
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| T |
41558315 |
tggacaatcttagaaga |
41558331 |
T |
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