View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11661_low_14 (Length: 377)
Name: NF11661_low_14
Description: NF11661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11661_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 1464188 - 1464553
Alignment:
| Q |
1 |
ttgtccatactccgcttgatgatagcctcgtgcacttgcannnnnnnnnccttttatctaattgtttcatattttctcgttacagactgccttcacatca |
100 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1464188 |
ttgtccatactccgcttgctgatagcctcgtgcacttgcatttttttt-ccttttatctaattgtttcatattttctcgttacagactgccttcacatca |
1464286 |
T |
|
| Q |
101 |
aagaaagactatggtagagaaaatagggaagcacaatgggcatcagcgcaaagatcacgccatggtcttcagcctcctacctccaacactatcaatgagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1464287 |
aagaaagactatggtagagaaaatagggaagcacaatgggcatcagcgcaaagatcacgccatggtcttcagcctcctacctccaacactatcaatgagt |
1464386 |
T |
|
| Q |
201 |
atagtagctatgaggagctttcagagattgcagagcaagccaagaaacgtgctgaaatggcaaggtaagccaattgaatggttgaaaaagatttcagaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1464387 |
atagtagctatgaggagctttcagagattgcagagcaagccaagaaacgtgctgaaatggcaaggtaagccaattgaatggttgaaaaagatttcagaag |
1464486 |
T |
|
| Q |
301 |
tggaaattattgttgaagagtaatgaattatgcggcataaacacttacaagtgaaagtgtgtctgtg |
367 |
Q |
| |
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| T |
1464487 |
tggaaattattgttgaagagtaatgaattatgcggcataaacactgacgagtgaaagtgtgtctgtg |
1464553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 101 - 328
Target Start/End: Original strand, 1491676 - 1491905
Alignment:
| Q |
101 |
aagaaagactatggtagagaaaatagggaagcacaatgggcatcagcgcaaagatcacgccatggtcttcagcctcctacctccaacactatcaatgagt |
200 |
Q |
| |
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| T |
1491676 |
aagaaagactatggtaaataacagagagaagcacaatgggaaacaacacaaggatcacttcatggtcttcaaccttttacctcaaaccttttcaatgaaa |
1491775 |
T |
|
| Q |
201 |
atagtagctatgaggagctttcagagattgcagagcaagccaagaaacgtgctgaaatggcaaggtaagccaattgaatgg-ttgaaaaagatttcagaa |
299 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||| |||||||| ||||||| | ||||| ||| ||| || ||||| || ||||||||| |||| |
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| T |
1491776 |
atagtagctatagggagctttcagagattgcagagcaagacaagaaacatgctgaagttgcaagttaatccatttaaatggtttaaaaaagattaaagaa |
1491875 |
T |
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| Q |
300 |
gtggaaattat-tgttgaagagtaatgaat |
328 |
Q |
| |
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||||||| ||| | |||||||||||||||| |
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| T |
1491876 |
gtggaaagtatgtattgaagagtaatgaat |
1491905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 101 - 289
Target Start/End: Complemental strand, 1490576 - 1490388
Alignment:
| Q |
101 |
aagaaagactatggtagagaaaatagggaagcacaatgggcatcagcgcaaagatcacgccatggtcttcagcctcctacctccaacactatcaatgagt |
200 |
Q |
| |
|
|||||||||||||||| |||| | || |||||||||||| | |||| || |||||| |||||| |||||||| |||||| ||| | | ||||| |
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| T |
1490576 |
aagaaagactatggtaaagaagagagagaagcacaatggaaagcagcacagggatcacttcatggtgttcagccttttacctcgaaccttttgaatgaaa |
1490477 |
T |
|
| Q |
201 |
atagtagctatgaggagctttcagagattgcagagcaagccaagaaacgtgctgaaatggcaaggtaagccaattgaatggttgaaaaa |
289 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||| |||||||| | || | | ||||||||||||| |||||||||| ||||| |
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| T |
1490476 |
atagtagctaaagggagctttcagagattgtagagcaagacaagaaacacgttgtagttgcaaggtaagccatttgaatggtttaaaaa |
1490388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 82 - 265
Target Start/End: Complemental strand, 1495455 - 1495269
Alignment:
| Q |
82 |
acagactgccttcacatcaaagaaagactatggtagagaaaatagggaagcacaatgggcatcagcgcaaagatcacgccatggtcttcagcctcc---t |
178 |
Q |
| |
|
||||||||||||||| |||||||||||||||| | |||| | ||||||||||||||||| | ||||| ||| ||| || |||||||||||||| |
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| T |
1495455 |
acagactgccttcactacaaagaaagactatggaaaagaagagagggaagcacaatgggcggctgcgcagagaacacttcacggtcttcagcctccggaa |
1495356 |
T |
|
| Q |
179 |
acctccaacactatcaatgagtatagtagctatgaggagctttcagagattgcagagcaagccaagaaacgtgctgaaatggcaagg |
265 |
Q |
| |
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|||||||| | ||||||| | | ||||||| || ||||| |||||||| ||||||||||||| |||||||||| | |||||| |
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|
| T |
1495355 |
gcctccaacgttttcaatgaaaagaatagctatagagaactttcggagattgcggagcaagccaagagacgtgctgaagttgcaagg |
1495269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 143; Significance: 5e-75; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 69 - 360
Target Start/End: Original strand, 26791967 - 26792250
Alignment:
| Q |
69 |
atattttctcgttacagactgccttcacatcaaagaaagactatggtagagaaaatagggaagcacaatgggcatcagcgcaaagatcacgccatggtct |
168 |
Q |
| |
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|||||||||| ||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||| | ||||||||| |||||||| |
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| T |
26791967 |
atattttctcattacagactgccttcacttcaaagaaagactatggtagagaacagagggaagcacaatgggcatcaacacaaagatcaattcatggtct |
26792066 |
T |
|
| Q |
169 |
tcagcctcctacctccaacactatcaatgagtatagtagctatgaggagctttcagagattgcagagcaagccaagaaacgtgctgaaatggcaaggtaa |
268 |
Q |
| |
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||||||| ||| |||| ||||| ||||||| ||||||||||| ||||||||||||| |||||||| | ||||| ||||||||| ||||| ||||||||| |
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|
| T |
26792067 |
tcagccttctagctcctacactttcaatgaaaatagtagctataaggagctttcagaaattgcagatctagccaggaaacgtgccgaaattgcaaggtaa |
26792166 |
T |
|
| Q |
269 |
gccaattgaatggttgaaaaagatttcagaagtggaaattattgttgaagagtaatgaattatgcggcataaacacttacaagtgaaagtgt |
360 |
Q |
| |
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|||| |||||||||||||||| |||||||||||||| |||||||||||||||||||| || ||||||||| ||||||||||| |
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| T |
26792167 |
gccacttgaatggttgaaaaa--------aagtggaaattattattgaagagtaatgaattatgtatcacaaacacttatgagtgaaagtgt |
26792250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 114
Target Start/End: Original strand, 50277990 - 50278023
Alignment:
| Q |
81 |
tacagactgccttcacatcaaagaaagactatgg |
114 |
Q |
| |
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||||||||||||||||| |||||||||||||||| |
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| T |
50277990 |
tacagactgccttcacaacaaagaaagactatgg |
50278023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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