View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11661_low_16 (Length: 331)
Name: NF11661_low_16
Description: NF11661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11661_low_16 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 34 - 308
Target Start/End: Original strand, 1344322 - 1344596
Alignment:
| Q |
34 |
gattataattatgatgctaatgctatattgtgttgaacacggtgcatgatttcaaatattagaatcatgtaaatcttttagaaagttccacttctatgag |
133 |
Q |
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| T |
1344322 |
gattataattatcatgctaatgctatattgtgctgaacacggtgcatgatttcaaatattagaatgacgtaaatcttttagaaagttccacttctatgag |
1344421 |
T |
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| Q |
134 |
tgcttgagctatctactcgatcgataatctcattttatgtcgatcactcgacaatatctgttttggtagagtaagcatttttaaattttgaatagcttta |
233 |
Q |
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| T |
1344422 |
tgcttgagctatctacttaatcggtaatctcattttatgccgatcgctctacaatatctgttttggtagagtaagcatttttaaattttgaattgcttca |
1344521 |
T |
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| Q |
234 |
tcactatttcaactatgcaacaatttccttgtgattgtgaagtcagtgtgttacttttcggtttctctatgttaa |
308 |
Q |
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| T |
1344522 |
tcactatttcaactatgcaacaatttccttgtgattgtgaagtcagtgtgttactatttggtttctcaatgttaa |
1344596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 85 - 288
Target Start/End: Complemental strand, 1355189 - 1354986
Alignment:
| Q |
85 |
tcaaatattagaatcatgtaaatcttttagaaagttccacttctatgagtgcttgagctatctactcgatcgataatctcattttatgtcgatcactcga |
184 |
Q |
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| T |
1355189 |
tcaaatattaggatcatgtaaatcttttagaaagttccatttctatgagtgcttgagctatctactcaatcgataatctcgttttatgtcgatcacttca |
1355090 |
T |
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| Q |
185 |
caatatctgttttggtagagtaagcatttttaaattttgaatagctttatcactatttcaactatgcaacaatttccttgtgattgtgaagtcagtgtgt |
284 |
Q |
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| T |
1355089 |
caatatctgttttggtagagtaagcatttttaaattttgaattgcttcatcactatttcaactatgcaagaatttccttgtgattgtgaagtcaatgtgt |
1354990 |
T |
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| Q |
285 |
tact |
288 |
Q |
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| T |
1354989 |
tact |
1354986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 198 - 322
Target Start/End: Complemental strand, 29052064 - 29051940
Alignment:
| Q |
198 |
ggtagagtaagcatttttaaattttgaatagctttatcactatttcaactatgcaacaatttccttgtgattgtgaagtcagtgtgttacttttcggttt |
297 |
Q |
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||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||| |
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| T |
29052064 |
ggtagagtaagcatttttaaattttgaattgcttcatcactatttcaactatgcaacaatttctttgtgattgtgaagtcagtgtgttactatttggttt |
29051965 |
T |
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| Q |
298 |
ctctatgttaataattctcaaattt |
322 |
Q |
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| T |
29051964 |
ctcaatgttagaaatgctcaaattt |
29051940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 287 - 331
Target Start/End: Original strand, 24618637 - 24618681
Alignment:
| Q |
287 |
cttttcggtttctctatgttaataattctcaaatttacaaagttt |
331 |
Q |
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| T |
24618637 |
cttttcggtttctcaatgttaataattctcaaatttacaaagttt |
24618681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 34265403 - 34265359
Alignment:
| Q |
209 |
catttttaaattttgaatagctttatcactatttcaactatgcaa |
253 |
Q |
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| T |
34265403 |
cattttaaaattttgaattgcttcatccctatttcaactatgcaa |
34265359 |
T |
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