View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11661_low_17 (Length: 311)
Name: NF11661_low_17
Description: NF11661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11661_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 11 - 202
Target Start/End: Complemental strand, 36766802 - 36766611
Alignment:
| Q |
11 |
caaaggagttgtggaaaaaacaatccacgaaattgagaaactcaatctaaaagtcaccaatagcagtttcatgacatttggaagttgtgcacttgatata |
110 |
Q |
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| T |
36766802 |
caaaggagttgtggaaaaaacaatccacaaaattgagaaactcaatctaaaagtcaccaatagcagtttcatgacatttggaagttgtgcacttgatata |
36766703 |
T |
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| Q |
111 |
acaattattgcacaggtaatctttgtttcaacaaaagtattgaattaagtttcagtagttatattttaagtcttttgactactttaacgaaa |
202 |
Q |
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| T |
36766702 |
acaattattgcacaggtaatctttgtttcaacaaaagtattgaattaagtttcagtagttatattttaagtcttttgactactttaatgaaa |
36766611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 196 - 296
Target Start/End: Complemental strand, 36766554 - 36766454
Alignment:
| Q |
196 |
aacgaaattactacaattgtctatcaataaggaaactatttgtgcaatttgcagatggatatggaattttgcatgacagtgaaggatcttgtgagaaacc |
295 |
Q |
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| T |
36766554 |
aacgaaattactacaattgtctatcaataaggaaactatttgtgcaatttgcagatggatgtggaattttgcatgacagtgaaggatcttgtgagaaacc |
36766455 |
T |
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| Q |
296 |
t |
296 |
Q |
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| T |
36766454 |
t |
36766454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 290
Target Start/End: Original strand, 2377966 - 2378017
Alignment:
| Q |
239 |
gcaatttgcagatggatatggaattttgcatgacagtgaaggatcttgtgag |
290 |
Q |
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| T |
2377966 |
gcaatttgcagatggatgtgggattttgcatgacggtgaaggatcttgtgag |
2378017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 39 - 130
Target Start/End: Original strand, 2377750 - 2377841
Alignment:
| Q |
39 |
gaaattgagaaactcaatctaaaagtcaccaatagcagtttcatgacatttggaagttgtgcacttgatataacaattattgcacaggtaat |
130 |
Q |
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| T |
2377750 |
gaaattgagaaacttcatctaaaagtcatcaatagcagttccttgacttttgggaatttcacccttgatataaccatcattgctcaggtaat |
2377841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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