View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11661_low_2 (Length: 529)
Name: NF11661_low_2
Description: NF11661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11661_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 263 - 526
Target Start/End: Complemental strand, 4563458 - 4563196
Alignment:
| Q |
263 |
tagttggtagcttctgattgttgttggatgtatgttgcatcccacatttgacctttatccctttaatttgcggcgcaacactttcatttagttggtcaac |
362 |
Q |
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| T |
4563458 |
tagttggtagcttctgatttgtgttggatgtatgttgcatcccacatttgacctttatccctttaatttgcggcgcaacactttcatttagttggtcaac |
4563359 |
T |
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| Q |
363 |
acaacatttctctctttaatgatccccaaattataatcttttttgttacttccaacacacgccattaatgcttaattatcaattccgtgtgnnnnnnnac |
462 |
Q |
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| T |
4563358 |
acaacatttctctctttaatgatccccaaattataatct-ttttgttacttccaacacaagccattgattcttaattatcaattccgtgtgtttttttac |
4563260 |
T |
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| Q |
463 |
tagtttcgacatcctcaagattttcttaaaactcttaaaacctaagaaagattcatctcactcg |
526 |
Q |
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| T |
4563259 |
tagtttcgacatcctcaagattttcttaaaactcttaaaacctaagaaagattcaactctctcg |
4563196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 20 - 254
Target Start/End: Complemental strand, 4563792 - 4563557
Alignment:
| Q |
20 |
aatgggtcatcgtctattgtatatttagaatccttcccatcgtgatagtgagaatctaaccgaaacagttttagtgtttt-acaataaacacgcgttttc |
118 |
Q |
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| T |
4563792 |
aatgggtcatcgtctattgttcatttagaatctttctcatcatgatagtgagaatctaaccgaaacagttttagtgtttttacaataaacacacgttttc |
4563693 |
T |
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| Q |
119 |
ttaatgatttggttatttttgaaacacatgcttagatatacatactccctccaacctcacaaatataaacaaatgtttgaacaatgatcagcttcacaaa |
218 |
Q |
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| T |
4563692 |
ttaatgatttggttatttttgaaacacatgtttagatagacatactccctccaacctcacaaatataaacaaatgtttgaacagtggtcaacttcacaaa |
4563593 |
T |
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| Q |
219 |
agacgtgctcgaagtgacaagtctagttgttggagt |
254 |
Q |
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| T |
4563592 |
agacgtgctcgaaatgacaagtctagttgttggagt |
4563557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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