View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11661_low_22 (Length: 257)

Name: NF11661_low_22
Description: NF11661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11661_low_22
NF11661_low_22
[»] chr1 (23 HSPs)
chr1 (1-247)||(48049380-48049624)
chr1 (3-247)||(48041299-48041555)
chr1 (3-130)||(29812793-29812921)
chr1 (5-151)||(48040150-48040297)
chr1 (3-167)||(48055919-48056083)
chr1 (15-131)||(48053114-48053231)
chr1 (5-204)||(29813541-29813743)
chr1 (12-151)||(48042819-48042959)
chr1 (3-103)||(48035733-48035833)
chr1 (14-204)||(48050595-48050791)
chr1 (38-162)||(48054322-48054447)
chr1 (27-103)||(5126503-5126579)
chr1 (27-103)||(48033102-48033178)
chr1 (15-99)||(48034698-48034782)
chr1 (28-103)||(39972782-39972857)
chr1 (14-154)||(48048628-48048769)
chr1 (26-103)||(22908322-22908399)
chr1 (28-99)||(48042225-48042296)
chr1 (27-100)||(48054678-48054751)
chr1 (31-99)||(48050016-48050084)
chr1 (32-103)||(48036725-48036796)
chr1 (169-244)||(48054794-48054868)
chr1 (102-154)||(48056271-48056323)
[»] chr3 (7 HSPs)
chr3 (25-104)||(31125750-31125829)
chr3 (28-104)||(53107639-53107715)
chr3 (28-103)||(34974803-34974878)
chr3 (27-99)||(47565677-47565749)
chr3 (28-99)||(38930471-38930542)
chr3 (28-99)||(53682982-53683053)
chr3 (37-88)||(32170503-32170554)
[»] chr2 (7 HSPs)
chr2 (26-103)||(6796495-6796572)
chr2 (27-103)||(35926121-35926197)
chr2 (28-104)||(39990580-39990656)
chr2 (28-103)||(6801050-6801125)
chr2 (26-99)||(7181562-7181635)
chr2 (28-99)||(13326996-13327067)
chr2 (26-100)||(35920133-35920207)
[»] chr7 (4 HSPs)
chr7 (28-103)||(43920607-43920682)
chr7 (28-99)||(23780469-23780540)
chr7 (28-99)||(40706106-40706177)
chr7 (33-90)||(46064797-46064854)
[»] chr4 (3 HSPs)
chr4 (28-103)||(38393559-38393634)
chr4 (27-99)||(49152535-49152607)
chr4 (33-90)||(26929298-26929355)
[»] chr6 (6 HSPs)
chr6 (26-100)||(10754596-10754670)
chr6 (28-100)||(992441-992513)
chr6 (18-155)||(32678569-32678699)
chr6 (26-99)||(10750280-10750353)
chr6 (28-99)||(18613088-18613159)
chr6 (26-99)||(10748684-10748757)


Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 48049380 - 48049624
Alignment:
Q  1 aatcacaaacaataacttttcatataagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48049380 aatcacaaacaataacttttcatataagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccct 48049479  T
Q  101 tttgaaggttaggaggttaactttccaatatattagttaaataccaataagctctgttttttgttttggttgaagatttggaatctgataaggttgactt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48049480 tttgaaggttaggaggttaactttccaatatattagttaaataccaataagctctgttttttgttttggttgaagatttggaatctgataaggttgactt 48049579  T
Q  201 attagttttttaagatccagaagctttcaagtttatatgcttttcat 247  Q
    |||||  ||||||||||||||||||||||||||||||||||||||||    
T  48049580 attag--ttttaagatccagaagctttcaagtttatatgcttttcat 48049624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 3 - 247
Target Start/End: Original strand, 48041299 - 48041555
Alignment:
Q  3 tcacaaacaataacttttcatataagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgccccttt 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  48041299 tcacaaacaataacttttcatataagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgccccttt 48041398  T
Q  103 tgaaggttaggaggttaactttccaatatatt-agttaaataccaataagctctg---------------ttttttgttttggttgaagatttggaatct 186  Q
    ||| |||||     ||||||||||||||| || |||||||||| |||||||||||               |||||| |||| ||||||||| ||||||||    
T  48041399 tgatggtta----tttaactttccaatattttaagttaaatacaaataagctctgtttttttttttttttttttttttttttgttgaagatctggaatct 48041494  T
Q  187 gataaggttgacttattagttttttaagatccagaagctttcaagtttatatgcttttcat 247  Q
    |||||||||||||| |||| |||||||||||| |||||| |||||||| ||||||||||||    
T  48041495 gataaggttgacttgttagatttttaagatccggaagctgtcaagtttttatgcttttcat 48041555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 3 - 130
Target Start/End: Complemental strand, 29812921 - 29812793
Alignment:
Q  3 tcacaaacaataacttttcatataagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccc-tt 101  Q
    ||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  29812921 tcacaaacaataactttgcatgtcagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgccccttt 29812822  T
Q  102 ttgaaggttaggaggttaactttccaata 130  Q
    |||||||||||||| |||||||| |||||    
T  29812821 ttgaaggttaggagtttaacttttcaata 29812793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 5 - 151
Target Start/End: Original strand, 48040150 - 48040297
Alignment:
Q  5 acaaacaataacttttcatataagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccc-tttt 103  Q
    |||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  48040150 acaaactaaaacttttcatatcagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgccccttttt 48040249  T
Q  104 gaaggttaggaggttaactttccaatatattagttaaataccaataag 151  Q
    |||||| ||||  ||||||||  ||||| |||||||||||| ||||||    
T  48040250 gaaggtcaggaatttaactttttaatattttagttaaatacaaataag 48040297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 3 - 167
Target Start/End: Original strand, 48055919 - 48056083
Alignment:
Q  3 tcacaaacaataacttttcatataagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccc-tt 101  Q
    |||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||    
T  48055919 tcacaaacaa-aacttttcatagcagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgccccttt 48056017  T
Q  102 ttgaaggttaggaggttaactttccaatatattagttaaataccaataagctctgttttttgtttt 167  Q
    |||||||||||||| || | ||| ||| || ||||||| |||| ||||||||| || |||| ||||    
T  48056018 ttgaaggttaggagttttatttttcaacattttagttatatacaaataagctcagtattttctttt 48056083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 15 - 131
Target Start/End: Original strand, 48053114 - 48053231
Alignment:
Q  15 acttttcatataagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccc-ttttgaaggttagg 113  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||     
T  48053114 acttttcatatcagggcatttggtctagtggtataattctcgctttgggtgcgagaggtcccgagttcaattctcggaatgcccctttttgaaggttaga 48053213  T
Q  114 aggttaactttccaatat 131  Q
    || |||||||| ||||||    
T  48053214 agtttaacttttcaatat 48053231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 5 - 204
Target Start/End: Complemental strand, 29813743 - 29813541
Alignment:
Q  5 acaaacaataacttttcatataagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgccccttttg 104  Q
    |||||| | |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||  | || |||||||||||    
T  29813743 acaaactaaaacttttcatatcagggcatttggtctagtggtttgattctcgctttgggtgcgagaggtcctgagttcgatttgctgagtgccccttttg 29813644  T
Q  105 aaggttaggaggttaactttc-caatatattagttaaataccaataagctc--tgttttttgttt-tggttgaagatttggaatctgataaggttgactt 200  Q
    ||||||| ||| ||||||||  |||||| |||||| ||||| |  ||||||  |||||||| ||| | ||||||||| ||||| |||| |||||||||||    
T  29813643 aaggttaagagtttaactttttcaatattttagtttaatac-aggaagctcggtgttttttatttattgttgaagatctggaagctgacaaggttgactt 29813545  T
Q  201 atta 204  Q
    ||||    
T  29813544 atta 29813541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 12 - 151
Target Start/End: Original strand, 48042819 - 48042959
Alignment:
Q  12 ataacttttcatataagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccc-ttttgaaggtt 110  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||| |||||||||||    
T  48042819 ataacttttcatatcagggcatttggtctagtggtatgattctcgctttgggtgcgagaggcccggagttcgattctctgaatgcccctttttgaaggtt 48042918  T
Q  111 aggaggttaactttccaatatattagttaaataccaataag 151  Q
    ||| | || | ||| ||| || |||||||||||| ||||||    
T  48042919 aggggttttatttttcaacattttagttaaatacaaataag 48042959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 3 - 103
Target Start/End: Original strand, 48035733 - 48035833
Alignment:
Q  3 tcacaaacaataacttttcatataagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgccccttt 102  Q
    |||| ||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  48035733 tcactaactataatttttcatatcagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgccccttt 48035832  T
Q  103 t 103  Q
    |    
T  48035833 t 48035833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 14 - 204
Target Start/End: Original strand, 48050595 - 48050791
Alignment:
Q  14 aacttttcatataagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccc---ttttgaaggtt 110  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||   || ||||||||    
T  48050595 aacttttcatagtagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccccttttgtgaaggtt 48050694  T
Q  111 aggaggttaactttccaatatattagttaaataccaataagctctg---ttttttgttttggttgaagatttggaatctgataaggttgacttatta 204  Q
    ||||| || | ||| ||| || ||||||||| || ||||| ||| |   |||||| || | ||||||||| | ||| |||| |||| ||||||||||    
T  48050695 aggagttttatttttcaacattttagttaaagacaaataaactcagtattttttttttattgttgaagatcttgaagctgacaaggatgacttatta 48050791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 38 - 162
Target Start/End: Original strand, 48054322 - 48054447
Alignment:
Q  38 tctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccctttt-gaaggttaggaggttaactttccaatatattag 136  Q
    |||||||  ||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||| |||||| ||||| |||||||| |||||| ||||    
T  48054322 tctagtgaaatgattctcgctttgggtgcgagaggtcctgagttcgattctcagaatgccgcttttcgaaggtcaggagtttaacttttcaatattttag 48054421  T
Q  137 ttaaataccaataagctctgtttttt 162  Q
    |||||||| |||||||| ||||||||    
T  48054422 ttaaatacaaataagctgtgtttttt 48054447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 27 - 103
Target Start/End: Original strand, 5126503 - 5126579
Alignment:
Q  27 agggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccctttt 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  5126503 agggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccctttt 5126579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 27 - 103
Target Start/End: Original strand, 48033102 - 48033178
Alignment:
Q  27 agggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccctttt 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  48033102 agggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccctttt 48033178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 48034698 - 48034782
Alignment:
Q  15 acttttcatataagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccc 99  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  48034698 acttttcatagcagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 48034782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 28 - 103
Target Start/End: Complemental strand, 39972857 - 39972782
Alignment:
Q  28 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccctttt 103  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  39972857 gggcatttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcggaatgcccctttt 39972782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 14 - 154
Target Start/End: Original strand, 48048628 - 48048769
Alignment:
Q  14 aacttttcatataagggcatttggtc-tagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatg-ccccttttgaaggtta 111  Q
    |||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||       
T  48048628 aacttttcatatcagggcatttggtcctagtggtatcattctcgctttgggtgcgagaggtcccaagtttgattctcggaatgcccccttttgaagg-cc 48048726  T
Q  112 ggaggttaactttccaatatattagttaaataccaataagctc 154  Q
     ||| ||||||||  ||||| |||||||||||| |||| ||||    
T  48048727 tgagtttaactttttaatattttagttaaatacaaataggctc 48048769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 22908322 - 22908399
Alignment:
Q  26 aagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccctttt 103  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||    
T  22908322 aagggcatttggtctagtggtatgattctcgcttagggtgcgagaggtctcgagttcaattctcggaatgcccctttt 22908399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 48042225 - 48042296
Alignment:
Q  28 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccc 99  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  48042225 gggcatttggtctagtggtatgattctcgcttcgggtgcgagaggttccgagttcgattctcggaatgcccc 48042296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 27 - 100
Target Start/End: Original strand, 48054678 - 48054751
Alignment:
Q  27 agggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccct 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  48054678 agggcatttggtctagaggtatgattctcgctttgggtgcgagaggttccgagttcaattctcggaatgcccct 48054751  T

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Target: chr1; HSP #20
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 48050016 - 48050084
Alignment:
Q  31 catttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccc 99  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  48050016 catttggtctagtggtatgattctcgctttgggtgtgagaggttccgagttcgattctcggaatgcccc 48050084  T

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Target: chr1; HSP #21
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 32 - 103
Target Start/End: Original strand, 48036725 - 48036796
Alignment:
Q  32 atttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccctttt 103  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||| |||||||||||||    
T  48036725 atttggtctagtggtatgattctcgctttgggtgccagaggtccggagtttgattctccgaatgcccctttt 48036796  T

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Target: chr1; HSP #22
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 169 - 244
Target Start/End: Original strand, 48054794 - 48054868
Alignment:
Q  169 gttgaagatttggaatctgataaggttgacttattagttttttaagatccagaagctttcaagtttatatgctttt 244  Q
    ||||||||| |||||||||| |||||||||||||| | ||||||||||||||||||| |||||||| |||||||||    
T  48054794 gttgaagatctggaatctgacaaggttgacttatttg-tttttaagatccagaagctgtcaagtttttatgctttt 48054868  T

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Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 154
Target Start/End: Original strand, 48056271 - 48056323
Alignment:
Q  102 ttgaaggttaggaggttaactttccaatatattagttaaataccaataagctc 154  Q
    ||||||| ||||||||||| ||| |||||| |||||||||||| |||||||||    
T  48056271 ttgaaggctaggaggttaatttttcaatattttagttaaatacaaataagctc 48056323  T

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Target: chr3 (Bit Score: 72; Significance: 8e-33; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 25 - 104
Target Start/End: Original strand, 31125750 - 31125829
Alignment:
Q  25 taagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgccccttttg 104  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  31125750 taagggcatttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcggaatgccccttttg 31125829  T

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Target: chr3; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 28 - 104
Target Start/End: Original strand, 53107639 - 53107715
Alignment:
Q  28 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgccccttttg 104  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  53107639 gggcatttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcggaatgccccttttg 53107715  T

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Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 34974803 - 34974878
Alignment:
Q  28 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccctttt 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  34974803 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccctttt 34974878  T

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Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 27 - 99
Target Start/End: Complemental strand, 47565749 - 47565677
Alignment:
Q  27 agggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccc 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  47565749 agggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 47565677  T

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Target: chr3; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 28 - 99
Target Start/End: Complemental strand, 38930542 - 38930471
Alignment:
Q  28 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccc 99  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  38930542 gggcatttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcggaatgcccc 38930471  T

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Target: chr3; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 53682982 - 53683053
Alignment:
Q  28 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccc 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  53682982 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 53683053  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 88
Target Start/End: Original strand, 32170503 - 32170554
Alignment:
Q  37 gtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattct 88  Q
    |||||||||||||||||| |||| |||||||||||||| | |||| ||||||    
T  32170503 gtctagtggtatgattctagcttggggtgcgagaggtcgcaagtttgattct 32170554  T

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Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 6796495 - 6796572
Alignment:
Q  26 aagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccctttt 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  6796495 aagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccctttt 6796572  T

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Target: chr2; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 27 - 103
Target Start/End: Complemental strand, 35926197 - 35926121
Alignment:
Q  27 agggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccctttt 103  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  35926197 agggcatttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcggaatgcccctttt 35926121  T

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Target: chr2; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 28 - 104
Target Start/End: Original strand, 39990580 - 39990656
Alignment:
Q  28 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgccccttttg 104  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  39990580 gggcatttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcggaatgccccttttg 39990656  T

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Target: chr2; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 28 - 103
Target Start/End: Complemental strand, 6801125 - 6801050
Alignment:
Q  28 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccctttt 103  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  6801125 gggcatttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcggaatgcccctttt 6801050  T

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Target: chr2; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 26 - 99
Target Start/End: Original strand, 7181562 - 7181635
Alignment:
Q  26 aagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccc 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  7181562 aagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 7181635  T

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Target: chr2; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 28 - 99
Target Start/End: Complemental strand, 13327067 - 13326996
Alignment:
Q  28 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccc 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  13327067 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 13326996  T

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Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 26 - 100
Target Start/End: Complemental strand, 35920207 - 35920133
Alignment:
Q  26 aagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccct 100  Q
    |||||||| |||||||||||||||||||| |||| |||||||||||||||| ||||| |||||||||||||||||    
T  35920207 aagggcatctggtctagtggtatgattcttgcttagggtgcgagaggtcccaagttcaattctcggaatgcccct 35920133  T

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Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 43920607 - 43920682
Alignment:
Q  28 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccctttt 103  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  43920607 gggcatttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcggaatgcccctttt 43920682  T

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Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 23780469 - 23780540
Alignment:
Q  28 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccc 99  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  23780469 gggcatttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcggaatgcccc 23780540  T

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Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 40706106 - 40706177
Alignment:
Q  28 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccc 99  Q
    |||||||||||||||| |||||||||||||||  ||||||||||||||||||||| ||||||||||||||||    
T  40706106 gggcatttggtctagttgtatgattctcgcttaaggtgcgagaggtcccgagttcaattctcggaatgcccc 40706177  T

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Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 46064854 - 46064797
Alignment:
Q  33 tttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcg 90  Q
    ||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||    
T  46064854 tttggtctagtggtatgattctcgcttcgggtgcgagaggtcgtgagttcgattctcg 46064797  T

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Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 28 - 103
Target Start/End: Complemental strand, 38393634 - 38393559
Alignment:
Q  28 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccctttt 103  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  38393634 gggcatttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcggaatgcccctttt 38393559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 27 - 99
Target Start/End: Complemental strand, 49152607 - 49152535
Alignment:
Q  27 agggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccc 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  49152607 agggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccc 49152535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 26929355 - 26929298
Alignment:
Q  33 tttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcg 90  Q
    ||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||    
T  26929355 tttggtctagtggtatgattctcgcttcgggtgcgagaggtcgtgagttcgattctcg 26929298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 7e-30; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 26 - 100
Target Start/End: Complemental strand, 10754670 - 10754596
Alignment:
Q  26 aagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccct 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  10754670 aagggcatttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcggaatgcccct 10754596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 28 - 100
Target Start/End: Complemental strand, 992513 - 992441
Alignment:
Q  28 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  992513 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtccggagttcgattctccgaatgcccct 992441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 155
Target Start/End: Complemental strand, 32678699 - 32678569
Alignment:
Q  18 tttcatataagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgccc--cttttgaaggttaggag 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||         |||||||   |||||| | |||||||    
T  32678699 tttcatataagggcatttggtctagtggtatgattctcgctttgggtgtgagaggtcctgagttc---------aatgcccattttttgatgattaggag 32678609  T
Q  116 gttaactttccaatatattagttaaataccaataagctct 155  Q
     |||||||| |||||| |||||||||||| ||||||||||    
T  32678608 tttaacttttcaatattttagttaaatacaaataagctct 32678569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 99
Target Start/End: Complemental strand, 10750353 - 10750280
Alignment:
Q  26 aagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccc 99  Q
    ||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||    
T  10750353 aagggcatttgatctagtggtatgattctcgcttagggtgcaagaggtcccgagttcaattctcggaatgcccc 10750280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 18613088 - 18613159
Alignment:
Q  28 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccc 99  Q
    ||||||||| ||||||||||||||||| |||| |||||||||||||||||||||  ||||||||||||||||    
T  18613088 gggcatttgatctagtggtatgattcttgcttagggtgcgagaggtcccgagtttaattctcggaatgcccc 18613159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 99
Target Start/End: Complemental strand, 10748757 - 10748684
Alignment:
Q  26 aagggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattctcggaatgcccc 99  Q
    ||||||||||||||||||| ||||||||||| || ||||| |||||||| |||| || ||||||||||||||||    
T  10748757 aagggcatttggtctagtgatatgattctcgtttagggtgtgagaggtctcgagctcaattctcggaatgcccc 10748684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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