View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11661_low_23 (Length: 255)

Name: NF11661_low_23
Description: NF11661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11661_low_23
NF11661_low_23
[»] chr7 (3 HSPs)
chr7 (78-206)||(1608830-1608960)
chr7 (86-185)||(2187860-2187960)
chr7 (78-185)||(19632944-19633053)
[»] chr5 (3 HSPs)
chr5 (78-185)||(37806540-37806650)
chr5 (122-185)||(37627431-37627495)
chr5 (91-170)||(33614707-33614785)
[»] chr8 (5 HSPs)
chr8 (86-185)||(29822632-29822733)
chr8 (131-185)||(7094160-7094216)
chr8 (131-185)||(7097893-7097949)
chr8 (131-170)||(45463058-45463097)
chr8 (137-206)||(454095-454166)
[»] chr1 (1 HSPs)
chr1 (86-206)||(41313952-41314075)
[»] chr2 (2 HSPs)
chr2 (131-206)||(19215544-19215621)
chr2 (137-192)||(19589281-19589337)
[»] chr4 (2 HSPs)
chr4 (91-166)||(637728-637803)
chr4 (148-190)||(11992147-11992190)
[»] chr3 (1 HSPs)
chr3 (137-185)||(8377591-8377641)


Alignment Details
Target: chr7 (Bit Score: 87; Significance: 8e-42; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 78 - 206
Target Start/End: Complemental strand, 1608960 - 1608830
Alignment:
Q  78 caagtgta-attcagtggagcaaagaccacgagtagatatcttattagctgctatattgctaaggtaaggaaaagggcgctccatttttta-tttatata 175  Q
    |||||||| |||||||||||||||||||| ||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  1608960 caagtgtagattcagtggagcaaagaccatgagtagaaatattaatagctgctatattgctaaggtaaggaaaagggcgctccattttttattttatata 1608861  T
Q  176 tgtatttactggttgattgaatgatgatgtt 206  Q
    ||||||||||||||| || || |||||||||    
T  1608860 tgtatttactggttgtttaaaggatgatgtt 1608830  T

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Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 86 - 185
Target Start/End: Original strand, 2187860 - 2187960
Alignment:
Q  86 attcagtggagcaaagaccacgagtagatatcttattagctgctatattgctaaggtaaggaaaagggcgctccatttttta-tttatatatgtatttac 184  Q
    |||||||||||||||||||| ||||||| || ||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  2187860 attcagtggagcaaagaccatgagtagaaatattaatagctgctatattgctaaggtaagggaaagggcgctccattttttattttatatatgtatttac 2187959  T
Q  185 t 185  Q
    |    
T  2187960 t 2187960  T

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Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 78 - 185
Target Start/End: Complemental strand, 19633053 - 19632944
Alignment:
Q  78 caagtgta-attcagtggagcaaagaccacgagtagatatcttattagctgctatattgctaaggtaaggaaaagggcgctccatttttta-tttatata 175  Q
    |||||||| |||||||||||||||||||| ||||| | || ||| |||||||||||||| |||||||||| |||||||||||||||||||| ||||||||    
T  19633053 caagtgtagattcagtggagcaaagaccatgagtataaatattaatagctgctatattgttaaggtaagggaaagggcgctccattttttattttatata 19632954  T
Q  176 tgtatttact 185  Q
    ||||||||||    
T  19632953 tgtatttact 19632944  T

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Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 78 - 185
Target Start/End: Complemental strand, 37806650 - 37806540
Alignment:
Q  78 caagtgta-attcagtggagcaaagaccacgagtagatatcttattagctgctatattgctaaggtaaggaaaagggcgctccatttttt--atttatat 174  Q
    |||||||| |||||||||||||||||||| ||||||| || ||| ||||||||||||||||||||||||| |||||||||||||||||||   |||||||    
T  37806650 caagtgtagattcagtggagcaaagaccatgagtagaaatattaatagctgctatattgctaaggtaagggaaagggcgctccatttttttattttatat 37806551  T
Q  175 atgtatttact 185  Q
    |||||||||||    
T  37806550 atgtatttact 37806540  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 122 - 185
Target Start/End: Complemental strand, 37627495 - 37627431
Alignment:
Q  122 tagctgctatattgctaaggtaaggaaaagggcgctccatttttta-tttatatatgtatttact 185  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  37627495 tagctgctatattgctaaggtaagggaaagggcgctccattttttattttatatatgtatttact 37627431  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 91 - 170
Target Start/End: Complemental strand, 33614785 - 33614707
Alignment:
Q  91 gtggagcaaagaccacgagtagatatcttattagctgctatattgctaaggtaaggaaaagggcgctccattttttattt 170  Q
    ||||||||||||||| | || || |||||| ||||  |||| | |||||||||||||||||||| ||||||| |||||||    
T  33614785 gtggagcaaagaccatgggttgaaatcttaatagcgactatct-gctaaggtaaggaaaagggcactccattatttattt 33614707  T

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Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 86 - 185
Target Start/End: Original strand, 29822632 - 29822733
Alignment:
Q  86 attcagtggagcaaagaccacgagtagatatcttattagctgctatattgctaaggtaaggaaaagggcgctccatttttt--atttatatatgtattta 183  Q
    ||||||||||||||| ||||||||| || |||||| ||||||||||||||||||||||||| |||||||||||||||||||   ||||||||||||||||    
T  29822632 attcagtggagcaaataccacgagttgaaatcttaatagctgctatattgctaaggtaagggaaagggcgctccatttttttattttatatatgtattta 29822731  T
Q  184 ct 185  Q
    ||    
T  29822732 ct 29822733  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 185
Target Start/End: Complemental strand, 7094216 - 7094160
Alignment:
Q  131 tattgctaaggtaaggaaaagggcgctccatttttt--atttatatatgtatttact 185  Q
    ||||| |||||||||| |||||||||||||||||||   ||||||||||||||||||    
T  7094216 tattgttaaggtaagggaaagggcgctccatttttttattttatatatgtatttact 7094160  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 185
Target Start/End: Complemental strand, 7097949 - 7097893
Alignment:
Q  131 tattgctaaggtaaggaaaagggcgctccatttttt--atttatatatgtatttact 185  Q
    ||||| |||||||||| |||||||||||||||||||   ||||||||||||||||||    
T  7097949 tattgttaaggtaagggaaagggcgctccatttttttattttatatatgtatttact 7097893  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 170
Target Start/End: Complemental strand, 45463097 - 45463058
Alignment:
Q  131 tattgctaaggtaaggaaaagggcgctccattttttattt 170  Q
    |||||||||||||||| ||||||||||||||| |||||||    
T  45463097 tattgctaaggtaagggaaagggcgctccattatttattt 45463058  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 206
Target Start/End: Complemental strand, 454166 - 454095
Alignment:
Q  137 taaggtaaggaaaagggcgctccatttttt--atttatatatgtatttactggttgattgaatgatgatgtt 206  Q
    ||||||| || |||||||||||||||||||   |||||||||||| ||||| |||| |  ||||||||||||    
T  454166 taaggtacgggaaagggcgctccatttttttattttatatatgtagttacttgttgttaaaatgatgatgtt 454095  T

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Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 86 - 206
Target Start/End: Complemental strand, 41314075 - 41313952
Alignment:
Q  86 attcagtggagcaaagaccacgagtagatatcttattagctgctatattgctaaggtaaggaaaagggcgctccatttttt---atttatatatgtattt 182  Q
    |||| ||||||||||||||| ||||||| || ||| ||||||||||||||||||||||||| ||| |||||||||||||||    |||||||||||| ||    
T  41314075 attccgtggagcaaagaccatgagtagaaatattaatagctgctatattgctaaggtaagggaaatggcgctccattttttctattttatatatgtagtt 41313976  T
Q  183 actggttgattgaatgatgatgtt 206  Q
    ||| |||| |  ||||||||||||    
T  41313975 acttgttgttaaaatgatgatgtt 41313952  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 206
Target Start/End: Original strand, 19215544 - 19215621
Alignment:
Q  131 tattgctaaggtaaggaaaagggcgctccattttt-ta-tttatatatgtatttactggttgattgaatgatgatgtt 206  Q
    ||||| |||||||||| |||||||||||||||||| || |||||||||||||||||| |||| |  ||||||||||||    
T  19215544 tattgttaaggtaagggaaagggcgctccatttttctattttatatatgtatttacttgttgttaaaatgatgatgtt 19215621  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 192
Target Start/End: Original strand, 19589281 - 19589337
Alignment:
Q  137 taaggtaaggaaaagggcgctccatttttta-tttatatatgtatttactggttgat 192  Q
    |||||||||||||| ||||||||||| |||| ||| ||||||||| |||| ||||||    
T  19589281 taaggtaaggaaaatggcgctccattatttattttttatatgtatctacttgttgat 19589337  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 91 - 166
Target Start/End: Original strand, 637728 - 637803
Alignment:
Q  91 gtggagcaaagaccacgagtagatatcttattagctgctatattgctaaggtaaggaaaagggcgctccatttttt 166  Q
    |||||||||||||||||||| || ||||||  |||||||   ||| |||||||||| |||| ||||||||| ||||    
T  637728 gtggagcaaagaccacgagttgaaatcttaacagctgctgctttgttaaggtaagggaaagtgcgctccatatttt 637803  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 148 - 190
Target Start/End: Complemental strand, 11992190 - 11992147
Alignment:
Q  148 aaagggcgctccatttttta-tttatatatgtatttactggttg 190  Q
    |||||||||||||||||||| |||||||||||||||||| ||||    
T  11992190 aaagggcgctccattttttattttatatatgtatttacttgttg 11992147  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 8377591 - 8377641
Alignment:
Q  137 taaggtaaggaaaagggcgctccatttttt--atttatatatgtatttact 185  Q
    |||||||||| |||||||||||||||||||   ||||||||||||||||||    
T  8377591 taaggtaagggaaagggcgctccatttttttattttatatatgtatttact 8377641  T

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