View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11661_low_25 (Length: 249)
Name: NF11661_low_25
Description: NF11661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11661_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 161; Significance: 6e-86; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 30893563 - 30893382
Alignment:
| Q |
1 |
ttcagaacacagctaaatccttaaacgacagacatacaaatatctggtattgaaaaccacaattcctgcagtttcaacacagtaatcactatatatannn |
100 |
Q |
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| T |
30893563 |
ttcagaacacagctaaatccttaaacgacagacatacaaatatctggtattgaaaaccacaattcctgcagtttcaacacagtaatcactatatatattt |
30893464 |
T |
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| Q |
101 |
nnnnactcaataactaacgcatagttgatatgatgaaaaggtgaaaaaggtatcaggaataaaaaccatccccagccactgc |
182 |
Q |
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| T |
30893463 |
ttttactcaataactaacgcatagttgatatgatgaaaaggtgaaaaaggtatcaggaataaaaaccatccccagccactgc |
30893382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 30893353 - 30893301
Alignment:
| Q |
181 |
gcgtgatgctctcaccattttttcaagaatgaaagaaaacaaaatccactatt |
233 |
Q |
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| T |
30893353 |
gcgtgatgctctcaccattttttcaagaatgaaagaaaacaaaatccactatt |
30893301 |
T |
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