View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11661_low_28 (Length: 241)

Name: NF11661_low_28
Description: NF11661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11661_low_28
NF11661_low_28
[»] chr4 (4 HSPs)
chr4 (2-239)||(48912526-48912763)
chr4 (18-234)||(48965095-48965311)
chr4 (122-234)||(48957910-48958022)
chr4 (135-225)||(48967233-48967323)
[»] scaffold0536 (3 HSPs)
scaffold0536 (1-234)||(6691-6924)
scaffold0536 (1-234)||(10673-10906)
scaffold0536 (16-58)||(1648-1690)
[»] chr5 (2 HSPs)
chr5 (38-228)||(28385106-28385296)
chr5 (20-234)||(12540451-12540665)
[»] chr2 (3 HSPs)
chr2 (38-225)||(13439975-13440162)
chr2 (135-225)||(13448138-13448228)
chr2 (50-232)||(13454602-13454784)
[»] chr8 (1 HSPs)
chr8 (135-210)||(12641795-12641870)
[»] chr7 (1 HSPs)
chr7 (38-228)||(3417744-3417934)
[»] chr6 (1 HSPs)
chr6 (2-60)||(12590353-12590411)


Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 2 - 239
Target Start/End: Original strand, 48912526 - 48912763
Alignment:
Q  2 ttttacaatgagaagttgataacacaggtgcatgggattggggtggaggtcggtgcaacggaatggagcacaactggtattggggaaagagagaaggtgg 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48912526 ttttacaatgagaagttgataacacaggtgcatgggattggggtggaggtcggtgcaacggaatggagcacaactggtattggggaaagagagaaggtgg 48912625  T
Q  102 tttggagggataatattgagaaggttgtgaagcgattgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagc 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48912626 tttggagggataatattgagaaggttgtgaagcgattgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagc 48912725  T
Q  202 taaacatgcaattaaagaaggtggttcatctcactcga 239  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  48912726 taaacatgcaattaaagaaggtggttcatctcattcga 48912763  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 48965311 - 48965095
Alignment:
Q  18 tgataacacaggtgcatgggattggggtggaggtcggtgcaacggaatggagcacaactggtattggggaaagagagaaggtggtttggagggataatat 117  Q
    |||||||| | ||||  |||||||| ||||| || |||||||| |||||| |    |||||| |||  |||||||||||| ||||  | || ||||  ||    
T  48965311 tgataacagaagtgcgagggattggagtggaagttggtgcaacagaatggtgtttgactggttttgaagaaagagagaagctggtgagtagtgatagcat 48965212  T
Q  118 tgagaaggttgtgaagcgattgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagctaaacatgcaattaaa 217  Q
     ||||||| ||||| | |||||||||||||||||||||||||||||||||| |||   | ||||| ||||||||| || || |||| ||  || ||| ||    
T  48965211 agagaaggctgtgaggagattgatggacagtggtgatgaagctgagaaaattagaagtcgtgctcaagagtttggagaaaaggctagacgagccattcaa 48965112  T
Q  218 gaaggtggttcatctca 234  Q
    |||||||| || |||||    
T  48965111 gaaggtggctcgtctca 48965095  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 234
Target Start/End: Complemental strand, 48958022 - 48957910
Alignment:
Q  122 aaggttgtgaagcgattgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagctaaacatgcaattaaagaag 221  Q
    |||| ||||||| ||||||||||| ||||||||||||||||| |||||| ||| | ||||| |||||| || || || |||| ||  ||  || ||||||    
T  48958022 aaggctgtgaagagattgatggacggtggtgatgaagctgaggaaatcaaacagcgtgctcaagagttcggagaaaaggctacacgagctgttcaagaag 48957923  T
Q  222 gtggttcatctca 234  Q
    |||| ||||||||    
T  48957922 gtggatcatctca 48957910  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 225
Target Start/End: Complemental strand, 48967323 - 48967233
Alignment:
Q  135 gattgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagctaaacatgcaattaaagaaggtgg 225  Q
    |||||||||||| ||  |||||||||||||| |||||||||| ||||||||| ||||| || || |||| ||  ||| || ||||||||||    
T  48967323 gattgatggacaatgacgatgaagctgagaagatcagacaacgtgctcgagactttggagaaaaggctacacgagcacttcaagaaggtgg 48967233  T

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Target: scaffold0536 (Bit Score: 102; Significance: 9e-51; HSPs: 3)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 6691 - 6924
Alignment:
Q  1 attttacaatgagaagttgataacacaggtgcatgggattggggtggaggtcggtgcaacggaatggagcacaactggtattggggaaagagagaaggtg 100  Q
    |||||||||||| |||||||||||||||||||   | |||||||||| ||| || ||| | || |||||  |||||||||||||||| ||||||||||||    
T  6691 attttacaatgaaaagttgataacacaggtgcgacgaattggggtggtggtgggggcagctgagtggagttcaactggtattggggagagagagaaggtg 6790  T
Q  101 gtttggagggataatattgagaaggttgtgaagcgattgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaag 200  Q
    ||  ||||||||| ||||||||||| ||||| | ||||||||||  ||||||| |||||||||||||||| | |  ||||||||||||||||||| || |    
T  6791 gtggggagggatagtattgagaaggctgtgaggagattgatggatggtggtgacgaagctgagaaaatcaaaaagtatgctcgagagtttggggataagg 6890  T
Q  201 ctaaacatgcaattaaagaaggtggttcatctca 234  Q
    ||||||||||   | |||||||||||||||||||    
T  6891 ctaaacatgcggctcaagaaggtggttcatctca 6924  T

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Target: scaffold0536; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 10673 - 10906
Alignment:
Q  1 attttacaatgagaagttgataacacaggtgcatgggattggggtggaggtcggtgcaacggaatggagcacaactggtattggggaaagagagaaggtg 100  Q
    |||||||||||||||||||||||| || ||||  |||||||||| ||| || ||||||   || ||| ||  |  |||||||||||| | ||||||| ||    
T  10673 attttacaatgagaagttgataacgcaagtgcgggggattgggggggaagtgggtgcagtagagtggtgcttagttggtattggggagaaagagaagttg 10772  T
Q  101 gtttggagggataatattgagaaggttgtgaagcgattgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaag 200  Q
    ||  ||||||||  ||||||||||||||||||| |||||||||||| | || ||| |||||||| |||||||| ||||||||||||||||||||| || |    
T  10773 gtcgggagggatggtattgagaaggttgtgaagagattgatggacaatagttatgtagctgagataatcagacgacatgctcgagagtttggggataagg 10872  T
Q  201 ctaaacatgcaattaaagaaggtggttcatctca 234  Q
    |||||  |||   | | |||||||||||||||||    
T  10873 ctaaatgtgcggctcaggaaggtggttcatctca 10906  T

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Target: scaffold0536; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 1648 - 1690
Alignment:
Q  16 gttgataacacaggtgcatgggattggggtggaggtcggtgca 58  Q
    ||||||||| ||||||||||||||||| ||||| |||||||||    
T  1648 gttgataactcaggtgcatgggattggagtggaagtcggtgca 1690  T

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Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 38 - 228
Target Start/End: Complemental strand, 28385296 - 28385106
Alignment:
Q  38 attggggtggaggtcggtgcaacggaatggagcacaactggtattggggaaagagagaaggtggtttggagggataatattgagaaggttgtgaagcgat 137  Q
    ||||| ||||| || |||| |||||||||| | |||| ||||| |||||| ||| ||||| ||||  | || ||||| || ||||||| | ||| |  ||    
T  28385296 attggagtggaagtaggtgtaacggaatggtgtacaaatggtaatggggagagaaagaagttggtgagcagagataacatagagaaggctatgaggaaat 28385197  T
Q  138 tgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagctaaacatgcaattaaagaaggtggttc 228  Q
    |||||||| |||| ||||||||||| || || ||||||| |||||||||||| || ||||| |||| ||  ||  ||||||||||||||||    
T  28385196 tgatggacggtggcgatgaagctgaaaatatgagacaacgtgctcgagagttaggagagaaggctacacgagctgttaaagaaggtggttc 28385106  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 234
Target Start/End: Complemental strand, 12540665 - 12540451
Alignment:
Q  20 ataacacaggtgcatgggattggggtggaggtcggtgcaacggaatggagcacaactggtattggggaaagagagaaggtggtttggagggataatattg 119  Q
    ||||||||||| |  || ||||| || || || |||||||| |||||| | |||| ||||| |||||| ||| ||||| ||||| | || |||   || |    
T  12540665 ataacacaggtccgaggaattggagtagaagtaggtgcaacagaatggtgtacaaatggtaatggggagagaaagaagttggttggcagagatggcatag 12540566  T
Q  120 agaaggttgtgaagcgattgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagctaaacatgcaattaaaga 219  Q
    |||||| | ||| | ||||||||||  ||||| |||||||||| || || |||| || ||| |||||| |||| ||||| |||| ||  ||  || ||||    
T  12540565 agaaggctatgaggagattgatggatggtggttatgaagctgaaaatatgagactacgtgcacgagagattggagagaaggctagacgagctgttcaaga 12540466  T
Q  220 aggtggttcatctca 234  Q
    ||||||||| |||||    
T  12540465 aggtggttcctctca 12540451  T

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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 225
Target Start/End: Complemental strand, 13440162 - 13439975
Alignment:
Q  38 attggggtggaggtcggtgcaacggaatggagcacaactggtattggggaaagagagaaggtggtttggagggataatattgagaaggttgtgaagcgat 137  Q
    ||||| ||||| |||||||||||||||||| | |  | |||| ||| ||| ||||||||| ||||  | |||||||| || ||||||| ||||| | |||    
T  13440162 attggagtggaagtcggtgcaacggaatggtgtaagaatggtgttgcggagagagagaagttggtgagcagggataacatagagaaggctgtgaggagat 13440063  T
Q  138 tgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagctaaacatgcaattaaagaaggtgg 225  Q
    ||||||| | ||||||||||||| | || || || | || ||||| ||||||||| || || |||| ||| || ||| ||||||||||    
T  13440062 tgatggagaatggtgatgaagctaaaaatatgaggctacttgctcaagagtttggagaaaaggctacacaagctattcaagaaggtgg 13439975  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 135 - 225
Target Start/End: Complemental strand, 13448228 - 13448138
Alignment:
Q  135 gattgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagctaaacatgcaattaaagaaggtgg 225  Q
    ||||||||||| |||||||||||||||| || ||||| | || ||||||||||||||| || ||||||| ||| || ||| ||||||||||    
T  13448228 gattgatggacggtggtgatgaagctgaaaatatcaggctacgtgctcgagagtttggagaaaaagctatacaagctattcaagaaggtgg 13448138  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 50 - 232
Target Start/End: Complemental strand, 13454784 - 13454602
Alignment:
Q  50 gtcggtgcaacggaatggagcacaactggtattggggaaagagagaaggtggtttggagggataatattgagaaggttgtgaagcgattgatggacagtg 149  Q
    ||||||||||| |||||| | |||| |||| ||| ||| ||||||||| ||||  | |  ||||  || ||||||| ||||| | ||||||||| | |||    
T  13454784 gtcggtgcaacagaatggtgtacaagtggtgttgcggagagagagaagttggtgagcaaagatagcatagagaaggctgtgaggagattgatgggcggtg 13454685  T
Q  150 gtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagctaaacatgcaattaaagaaggtggttcatct 232  Q
    ||||||||||| | || |||||   || ||||||||||||||| || || |||| ||| || ||| || ||||||| ||||||    
T  13454684 gtgatgaagctaaaaatatcagggtacgtgctcgagagtttggagaaaaggctacacaagctattcaaaaaggtggctcatct 13454602  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 210
Target Start/End: Original strand, 12641795 - 12641870
Alignment:
Q  135 gattgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagctaaacatgc 210  Q
    |||||||||||  ||||||||||||| || |||||||||||| ||||| |||||||||| | || |||| ||||||    
T  12641795 gattgatggacgatggtgatgaagctaaggaaatcagacaacgtgctcaagagtttgggaaaaaggctacacatgc 12641870  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 228
Target Start/End: Original strand, 3417744 - 3417934
Alignment:
Q  38 attggggtggaggtcggtgcaacggaatggagcacaactggtattggggaaagagagaaggtggtttggagggataatattgagaaggttgtgaagcgat 137  Q
    ||||| ||||| || |||||||| |||||| |  ||  |||||||||||| ||| ||||| ||||  | || ||| | || |||||||   ||| | |||    
T  3417744 attggagtggaagtaggtgcaacagaatggcgtgcacatggtattggggagagaaagaagttggtgagcagagatgacatagagaaggcaatgaggagat 3417843  T
Q  138 tgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagctaaacatgcaattaaagaaggtggttc 228  Q
    ||||||||||| ||||||| |||||    || |||| || |||||||||| |||| ||||| |||||||  || ||| |||||||||||||    
T  3417844 tgatggacagtagtgatgaggctgaaggtatgagactacgtgctcgagagcttggagagaaggctaaacgagctattcaagaaggtggttc 3417934  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 12590353 - 12590411
Alignment:
Q  2 ttttacaatgagaagttgataacacaggtgcatgggattggggtggaggtcggtgcaac 60  Q
    |||||||||||||||||||||||  | |||||||| ||||| ||||| || ||||||||    
T  12590353 ttttacaatgagaagttgataactgatgtgcatggaattggagtggaagttggtgcaac 12590411  T

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