View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11661_low_29 (Length: 241)
Name: NF11661_low_29
Description: NF11661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11661_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 48049349 - 48049127
Alignment:
| Q |
1 |
ttgaagttttgacctcttatttttgtcacatgtcattgtcatcattacattggtagaattcacattttttcatagtttttctctacatctatcgactgat |
100 |
Q |
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| T |
48049349 |
ttgaagttttgacctcttatttttgtcacatgtcattgtcatcattacattggtagacttcacattttt-catagtttttctctacatctatcgactgat |
48049251 |
T |
|
| Q |
101 |
ccaccacatatgtgatctattcttcttactatagaatctatagatttccttcacacatgtccaaaccagctaagtcgagatttaaccatcttattacaat |
200 |
Q |
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| T |
48049250 |
ccaccacatatgtgatctattcttcttactatagaatctatagatttccttcacacatgtccaaaccagctaagtcgagatttaaccatcttattacaat |
48049151 |
T |
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| Q |
201 |
tggtgctagcttgctagcccaact |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
48049150 |
tggtgctagcttgctagcccaact |
48049127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 59 - 223
Target Start/End: Complemental strand, 48040994 - 48040835
Alignment:
| Q |
59 |
ttcacattttttcatagtttttctctacatctatcgactgatccaccacatatgtgatctattcttcttactatagaatctatagatttccttcacacat |
158 |
Q |
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| T |
48040994 |
ttcatattttttcatggtttttctctacatcaatcgactgaaccaccatccatgtgatctattctccttactata------atagatttcctccacacat |
48040901 |
T |
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| Q |
159 |
gtccaaaccagctaagtcgagatttaaccatctta-ttacaattggtgctagcttgctagcccaac |
223 |
Q |
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| T |
48040900 |
gtccaaaccagctaagtcgggatttaaccatcttatttacaattggtgctagcttgctagcccaac |
48040835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 113 - 208
Target Start/End: Original strand, 29813096 - 29813192
Alignment:
| Q |
113 |
tgatctattcttcttactatagaatctatagatttccttcacacatgtccaaaccagctaagtcgagatttaaccatcttat-tacaattggtgcta |
208 |
Q |
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| T |
29813096 |
tgatttattctccttattacagaatttatagatttcctccacacatgtccaaaccacctaaatctagatttaagcatcgtatatacaataggtgcta |
29813192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 48035348 - 48035303
Alignment:
| Q |
139 |
tatagatttccttcacacatgtccaaaccagctaagtcgagattta |
184 |
Q |
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| T |
48035348 |
tatagatttcctccacacatgtccaaaccagcaaagctgagattta |
48035303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 68
Target Start/End: Complemental strand, 48054604 - 48054563
Alignment:
| Q |
27 |
cacatgtcattgtcatcattacattggtagaattcacatttt |
68 |
Q |
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| T |
48054604 |
cacatgtcattgttatcattacattggtagcattcaaatttt |
48054563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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