View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11661_low_3 (Length: 526)

Name: NF11661_low_3
Description: NF11661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11661_low_3
NF11661_low_3
[»] chr1 (1 HSPs)
chr1 (1-511)||(52174711-52175221)
[»] chr7 (10 HSPs)
chr7 (1-149)||(31585087-31585235)
chr7 (1-169)||(31607917-31608085)
chr7 (1-169)||(31617930-31618098)
chr7 (1-113)||(31604382-31604494)
chr7 (1-154)||(31614216-31614369)
chr7 (1-140)||(31575686-31575825)
chr7 (434-481)||(31604126-31604173)
chr7 (434-481)||(31607753-31607800)
chr7 (1-142)||(31594744-31594885)
chr7 (440-481)||(31617732-31617773)


Alignment Details
Target: chr1 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 1 - 511
Target Start/End: Original strand, 52174711 - 52175221
Alignment:
Q  1 aataaagtaatagaaatgttggaagggccactttcatcagtgccatatcctccaaagcccgtcttatgttatcctgaaacgccaccactagaaatgtcag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52174711 aataaagtaatagaaatgttggaagggccactttcatcagtgccatatcctccaaagcccgtcttatgttatcctgaaacgccaccactagaaatgtcag 52174810  T
Q  101 acatgtcttcatccaatttggatgagacgaattccattacaatgtcaaaataatcgttctttctataaaatgttagtgccctcaaggtggcggaggtggt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  52174811 acatgtcttcatccaatttggatgagacgaattccattacaatgtcaaaataatcgttctttctataaaatgttaatgccctcaaggtggcggaggtggt 52174910  T
Q  201 tgattctgtcaagaacctatcttggaaattgtttttaggaaaaacagtgggtctaccttgtcttttctatgaaaagttttatcaccctctagattgtatg 300  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52174911 tgattctgtcaagaacctatcttggaaattgtttttaagaaaaacagtgggtctaccttgtcttttctatgaaaagttttatcaccctctagattgtatg 52175010  T
Q  301 ttaagatagattcgttgatttgttggtttcagtcgaattctttaatctttattcttggggagggttgagtagtacttgtattttatctcattcagtgggt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52175011 ttaagatagattcgttgatttgttggtttcagtcgaattctttaatctttattcttggggagggttgagtagtacttgtattttatctcattcagtgggt 52175110  T
Q  401 ttagttgcacctctatttatttccgactttttcatatcgatcttattatttctgttgtgaatttaattcaggcaccatactagtttaaatacaatttaga 500  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  52175111 ttagttgcacctctatttatttctgactttttcatatcgatcttattatttctgttgtgaattcaattcaggcaccatactagtttaaatacaatttaga 52175210  T
Q  501 agaaaatacct 511  Q
    |||||||||||    
T  52175211 agaaaatacct 52175221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 31585235 - 31585087
Alignment:
Q  1 aataaagtaatagaaatgttggaagggccactttcatcagtgccatatcctccaaagcccgtcttatgttatcctgaaacgccaccactagaaatgtcag 100  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| || || ||||| ||||||| || ||||||||     
T  31585235 aataaagtaatagaaatgttgcaaggaccactttcatcagtgccatatcctccaaagcccgtcttattttctcttgaaaggccaccagtacaaatgtcac 31585136  T
Q  101 acatgtcttcatccaatttggatgagacgaattccattacaatgtcaaa 149  Q
    | || |||||| || | | ||||||||| ||||| |||||||| |||||    
T  31585135 atatatcttcaaccgactgggatgagacaaattcaattacaatatcaaa 31585087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 31608085 - 31607917
Alignment:
Q  1 aataaagtaatagaaatgttggaagggccactttcatcagtgccatatcctccaaagcccgtcttatgttatcctgaaacgccaccactagaaatgtcag 100  Q
    ||||||||||||||||||||| |||| || || ||||||||| |||||||||||||||| ||||||| || ||| |||| |||||||||| || |||||     
T  31608085 aataaagtaatagaaatgttgcaaggaccgctgtcatcagtgtcatatcctccaaagccggtcttattttctccggaaaggccaccactacaattgtcat 31607986  T
Q  101 acatgtcttcatccaatttggatgagacgaattccattacaatgtcaaaataatcgttctttctataaa 169  Q
    | |||||||||||  ||||  ||||||| |||||  ||||| |||||||||||  ||||| ||||||||    
T  31607985 atatgtcttcatctgatttatatgagacaaattcagttacagtgtcaaaataactgttctatctataaa 31607917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 31618098 - 31617930
Alignment:
Q  1 aataaagtaatagaaatgttggaagggccactttcatcagtgccatatcctccaaagcccgtcttatgttatcctgaaacgccaccactagaaatgtcag 100  Q
    ||||||||||||||||||||| |||| ||||||||||| ||  |||||||||||||||| ||||||| ||  || |||| ||||  |||| || ||||||    
T  31618098 aataaagtaatagaaatgttgcaaggaccactttcatcggtatcatatcctccaaagcctgtcttatattcacccgaaaggccagaactacaagtgtcag 31617999  T
Q  101 acatgtcttcatccaatttggatgagacgaattccattacaatgtcaaaataatcgttctttctataaa 169  Q
    | |||||||||||| ||||| | ||||| |||||  ||||| | |||||||||| ||| ||||||||||    
T  31617998 atatgtcttcatccgatttgtacgagacaaattcagttacagtatcaaaataattgttatttctataaa 31617930  T

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Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 31604494 - 31604382
Alignment:
Q  1 aataaagtaatagaaatgttggaagggccactttcatcagtgccatatcctccaaagcccgtcttatgttatcctgaaacgccaccactagaaatgtcag 100  Q
    ||||||||||||||||||||| |||| ||||||||| || |  |||||||||||||||||||||||| ||  ||||||| ||||| | || || ||||||    
T  31604494 aataaagtaatagaaatgttgcaaggaccactttcaacaatatcatatcctccaaagcccgtcttatattcacctgaaaggccacaattacaagtgtcag 31604395  T
Q  101 acatgtcttcatc 113  Q
    |||||||||||||    
T  31604394 acatgtcttcatc 31604382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 31614369 - 31614216
Alignment:
Q  1 aataaagtaatagaaatgttggaagggccactttcatcagtgccatatcctccaaagcccgtcttatgttatcctgaaacgccaccactagaaatgtcag 100  Q
    ||||||||||||||||||||| |||| ||||||||||| ||| ||||||||||||| ||| |||||  ||  ||  ||| |||||||||| || ||| ||    
T  31614369 aataaagtaatagaaatgttgcaaggaccactttcatcggtgtcatatcctccaaatcccttcttacattcaccataaaggccaccactacaagtgttag 31614270  T
Q  101 acatgtcttcatccaatttggatgagacgaattccattacaatgtcaaaataat 154  Q
    | || ||||||||| ||||| | ||||| ||||| |||||| | ||||||||||    
T  31614269 atatttcttcatccgatttgtacgagacaaattcaattacagtatcaaaataat 31614216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 31575825 - 31575686
Alignment:
Q  1 aataaagtaatagaaatgttggaagggccactttcatcagtgccatatcctccaaagcccgtcttatgttatcctgaaacgccaccactagaaatgtcag 100  Q
    ||||||||||||||||||||| |||| |||||||| || ||| |||||||||||||||| ||||||| || |||||||| | |||| ||| ||||| |      
T  31575825 aataaagtaatagaaatgttgcaaggaccactttcctcggtgtcatatcctccaaagcctgtcttattttctcctgaaaggacaccgctacaaatgccgc 31575726  T
Q  101 acatgtcttcatccaatttggatgagacgaattccattac 140  Q
    | || ||||||||| ||| | ||||||| ||||| |||||    
T  31575725 atatatcttcatccgattcgtatgagacaaattctattac 31575686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 434 - 481
Target Start/End: Complemental strand, 31604173 - 31604126
Alignment:
Q  434 atatcgatcttattatttctgttgtgaatttaattcaggcaccatact 481  Q
    ||||| |||||||||||||||||||||||| || ||| ||||||||||    
T  31604173 atatcaatcttattatttctgttgtgaattcaagtcatgcaccatact 31604126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 434 - 481
Target Start/End: Complemental strand, 31607800 - 31607753
Alignment:
Q  434 atatcgatcttattatttctgttgtgaatttaattcaggcaccatact 481  Q
    ||||| |||||||||||||||||||||||| || ||| ||||||||||    
T  31607800 atatcaatcttattatttctgttgtgaattcaagtcatgcaccatact 31607753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 31594885 - 31594744
Alignment:
Q  1 aataaagtaatagaaatgttggaagggccactttcatcagtgccatatcctccaaagcccgtcttatgttatcctgaaacgccaccactagaaatgtcag 100  Q
    ||||||||||| |||||| |  |||| || |||||||| ||  ||| ||||||||| || ||||||| || |||| ||| |||||||||| || | |||     
T  31594885 aataaagtaattgaaatgctacaaggaccgctttcatcggtcacatttcctccaaaacctgtcttattttctcctaaaaggccaccactacaactctcaa 31594786  T
Q  101 acatgtcttcatccaatttggatgagacgaattccattacaa 142  Q
    | |||||||||||  ||| | | ||||| ||||| |||||||    
T  31594785 atatgtcttcatcagattggcaagagacaaattcaattacaa 31594744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 481
Target Start/End: Complemental strand, 31617773 - 31617732
Alignment:
Q  440 atcttattatttctgttgtgaatttaattcaggcaccatact 481  Q
    |||||||||||||||||||||||| || ||| ||||||||||    
T  31617773 atcttattatttctgttgtgaattcaagtcatgcaccatact 31617732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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