View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11661_low_4 (Length: 524)
Name: NF11661_low_4
Description: NF11661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11661_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 135; Significance: 4e-70; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 19 - 153
Target Start/End: Complemental strand, 27306163 - 27306029
Alignment:
| Q |
19 |
tgaaaaacaaatgcaaactatcctcatcatttgactcacattaagcaagaatttgtaggataatttactcctttatcttggagacaccatcataaatata |
118 |
Q |
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| T |
27306163 |
tgaaaaacaaatgcaaactatcctcatcatttgactcacattaagcaagaatttgtaggataatttactcctttatcttggagacaccatcataaatata |
27306064 |
T |
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| Q |
119 |
gttgttatgccaaattggaaaagattcaccatcat |
153 |
Q |
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| T |
27306063 |
gttgttatgccaaattggaaaagattcaccatcat |
27306029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 299 - 520
Target Start/End: Complemental strand, 27305815 - 27305599
Alignment:
| Q |
299 |
ccttaaccaattaaattcttcccgataaattttgagtgtgattttaatttgatgctaatccttaagtgccaatttaatgagtttgagtttttcatttaga |
398 |
Q |
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| T |
27305815 |
ccttaaccaatttaattcttcccgataaattttgagtgtgattttaatttgattctaatccttaagtgccaatttaatgagtttgagtttttcttttgaa |
27305716 |
T |
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| Q |
399 |
acaaatccaccccaccgatcaacttgaaaagaatcccatttctcctgaacaaattgttaatactccggaacatcggcccaacatttcaacattcgagatg |
498 |
Q |
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| T |
27305715 |
acaaatccactccacccatcaac----aaagaatcccatttctcccgaacaaattgtttataccccagaacatcggcccaatatttcaacatttgagat- |
27305621 |
T |
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| Q |
499 |
gtctagggtcccaattctcctc |
520 |
Q |
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| T |
27305620 |
gtctaaggctccaattctcctc |
27305599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 139 - 274
Target Start/End: Complemental strand, 27305949 - 27305812
Alignment:
| Q |
139 |
aagattcaccatcataaattcagcattgactgttgccaacaaatattagtattcac--tcttgacaacaaatacaaatcagcagtaagaacatgcaattc |
236 |
Q |
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|||||||||||||||||||||||| || ||||||||||||||||| |||||||||| ||||||| | |||||||||||| | ||||||||||||||||| |
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| T |
27305949 |
aagattcaccatcataaattcagctttaactgttgccaacaaatactagtattcacactcttgacgataaatacaaatcaaccgtaagaacatgcaattc |
27305850 |
T |
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| Q |
237 |
gtccacttcagcctctagaagcaaagcattctcccctt |
274 |
Q |
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| T |
27305849 |
ccccacttcggcctctagaagcaaatcattctcccctt |
27305812 |
T |
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