View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11661_low_5 (Length: 505)

Name: NF11661_low_5
Description: NF11661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11661_low_5
NF11661_low_5
[»] chr7 (4 HSPs)
chr7 (205-486)||(28892147-28892428)
chr7 (1-61)||(28892570-28892630)
chr7 (428-480)||(24672791-24672843)
chr7 (443-475)||(34925274-34925306)
[»] chr2 (1 HSPs)
chr2 (427-488)||(28804409-28804470)
[»] chr1 (2 HSPs)
chr1 (443-480)||(15707576-15707613)
chr1 (443-488)||(46982845-46982890)
[»] chr6 (1 HSPs)
chr6 (438-486)||(29166817-29166865)


Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-150; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 205 - 486
Target Start/End: Complemental strand, 28892428 - 28892147
Alignment:
Q  205 tcccaaatcacataccttgcgtaggtcttgcatgaacttcaacatctctggagtaaccccctaacaattgagtaggcaacagtaaatagatgtgatccaa 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28892428 tcccaaatcacataccttgcgtaggtcttgcatgaacttcaacatctctggagtaaccccctaacaattgagtaggcaacagtaaatagatgtgatccaa 28892329  T
Q  305 agccaaacaataaaaaataacaaatccatattttctagtcttgttcacagcaaggagaaatcacggcattttatgataagcagactgatgattaacatta 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||    
T  28892328 agccaaacaataaaaaataacaaatccatattttctagtcttgttcacagcaaggagaagtcacggcattttatgataagcggactgatgattaagatta 28892229  T
Q  405 gatgactcaacagcaatattgccaattacggatcatgcaaaatagcagtttgttcaaattcggctatgctatagtgttatag 486  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28892228 gatgactcaacagcaatattgccaattacggatcatgcaaaatagcagtttgttcaaattcggctatgctatagtgttatag 28892147  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 28892630 - 28892570
Alignment:
Q  1 gatacttatagctaacctgtctggccaagttgttcagatatctttacgagatcagaacccc 61  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  28892630 gatacttatagctaacctgtctggccaagttgctcagatatctttacgagatcagaacccc 28892570  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 428 - 480
Target Start/End: Original strand, 24672791 - 24672843
Alignment:
Q  428 aattacggatcatgcaaaatagcagtttgttcaaattcggctatgctatagtg 480  Q
    |||||||||||||| |||||||| |||||||||||||| |||| || ||||||    
T  24672791 aattacggatcatggaaaatagcggtttgttcaaattctgctacgcaatagtg 24672843  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 443 - 475
Target Start/End: Original strand, 34925274 - 34925306
Alignment:
Q  443 aaaatagcagtttgttcaaattcggctatgcta 475  Q
    ||||||||||||||||||||||| |||||||||    
T  34925274 aaaatagcagtttgttcaaattctgctatgcta 34925306  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 427 - 488
Target Start/End: Complemental strand, 28804470 - 28804409
Alignment:
Q  427 caattacggatcatgcaaaatagcagtttgttcaaattcggctatgctatagtgttatagtg 488  Q
    |||| |||||||||| |||||||||||||||||||||| || |||| |||| ||||||||||    
T  28804470 caatcacggatcatggaaaatagcagtttgttcaaatttggatatgttatattgttatagtg 28804409  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 443 - 480
Target Start/End: Original strand, 15707576 - 15707613
Alignment:
Q  443 aaaatagcagtttgttcaaattcggctatgctatagtg 480  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  15707576 aaaatagcagtttgttcaaattccgctatgctatagtg 15707613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 443 - 488
Target Start/End: Complemental strand, 46982890 - 46982845
Alignment:
Q  443 aaaatagcagtttgttcaaattcggctatgctatagtgttatagtg 488  Q
    ||||||||||||||||||||||  |||||||||||||||| |||||    
T  46982890 aaaatagcagtttgttcaaattttgctatgctatagtgttgtagtg 46982845  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 438 - 486
Target Start/End: Complemental strand, 29166865 - 29166817
Alignment:
Q  438 catgcaaaatagcagtttgttcaaattcggctatgctatagtgttatag 486  Q
    |||| |||||||||||||||||||||||  |||||| | ||||||||||    
T  29166865 catggaaaatagcagtttgttcaaattccactatgcaacagtgttatag 29166817  T

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