View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11661_low_6 (Length: 474)
Name: NF11661_low_6
Description: NF11661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11661_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 1 - 465
Target Start/End: Original strand, 36766779 - 36767243
Alignment:
| Q |
1 |
attgttttttccacaactcctttgattttctcacaatgaactcttatgaggacatttctatcacaaaatcttgcttcaatttctggtagttcttcgtcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36766779 |
attgttttttccacaactcctttgattttctcacaatgaactcttatgaggacatttctatcacaaaatcttgcttcaatttctggtagttcttcgtcaa |
36766878 |
T |
|
| Q |
101 |
agggatcaccagattctgccaaagagttttcaacatcattggatagttgatatttcttcacaaccaccacaaattccacgtttttcttcatgttctgttc |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36766879 |
agggatcaccagattctgccgaagagttttcaacatcattggatagttgatatttcttcacaaccaccacaaattccacgtttttcttcatgttctgttc |
36766978 |
T |
|
| Q |
201 |
ctcctcaagaaccttcaccttctcttgcaatttcttcaagtacttgatagcatctccaagaacagtaactttgtccatctgttagtagtagcacaatgaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36766979 |
ctcctcaagaaccttcaccttctcttgcaatttcttcaagtacttgatagcatctccaagaacagtaactttgtccatctgttagtagtagcacaatgaa |
36767078 |
T |
|
| Q |
301 |
aaattgagacgacaaaaattgttaaagatagtaccataaacacattcttatatattcaccgtgtgtcctcttaatagtaaacactaaatgattcaacatg |
400 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
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| T |
36767079 |
aaactgagacgacaaaaattgttaaagatagtaccataaacacattcttatatattcaccgtgtgtcctactaatagtaaacactaaatgatccaacatg |
36767178 |
T |
|
| Q |
401 |
tgttcaacatagatatcgagaaaaaacttaagtcccgcgttaggcagagatcataaagcctatgc |
465 |
Q |
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| T |
36767179 |
tgttcaacatagatatcgagaaaaaacttaagtcccgcgttaggcagagatcataaagcctatgc |
36767243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 145 - 282
Target Start/End: Complemental strand, 2377598 - 2377461
Alignment:
| Q |
145 |
agttgatatttcttcacaaccaccacaaattccacgtttttcttcatgttctgttcctcctcaagaaccttcaccttctcttgcaatttcttcaagtact |
244 |
Q |
| |
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|||||| |||||||||| | || ||| ||||||| |||||||| | |||||||||||||||||||| |||| ||||||| || || ||| |||||| |
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| T |
2377598 |
agttgagatttcttcactattacaacagattccacagttttcttccttttctgttcctcctcaagaacactcactttctcttccatttgctttaagtacc |
2377499 |
T |
|
| Q |
245 |
tgatagcatctccaagaacagtaactttgtccatctgt |
282 |
Q |
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| ||||| ||||||||||||| | |||||||||||||| |
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| T |
2377498 |
ttatagcttctccaagaacagaagctttgtccatctgt |
2377461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 2377713 - 2377658
Alignment:
| Q |
33 |
acaatgaactcttatgaggacatttctatcacaaaatcttgcttcaatttctggta |
88 |
Q |
| |
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|||||| | ||||||||||||| |||| ||||||||||||||||||||||| |||| |
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| T |
2377713 |
acaatgtagtcttatgaggacacttctttcacaaaatcttgcttcaatttcaggta |
2377658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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