View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11661_low_8 (Length: 463)

Name: NF11661_low_8
Description: NF11661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11661_low_8
NF11661_low_8
[»] chr7 (16 HSPs)
chr7 (18-391)||(37162320-37162687)
chr7 (18-103)||(18363717-18363801)
chr7 (18-103)||(29785271-29785356)
chr7 (21-101)||(33869418-33869498)
chr7 (18-69)||(21570002-21570053)
chr7 (385-420)||(37162695-37162730)
chr7 (18-83)||(17113836-17113901)
chr7 (18-103)||(26459380-26459465)
chr7 (32-83)||(4566412-4566463)
chr7 (28-103)||(9608609-9608684)
chr7 (28-103)||(9836181-9836256)
chr7 (31-94)||(15137583-15137646)
chr7 (18-69)||(33222425-33222476)
chr7 (18-72)||(29538532-29538586)
chr7 (18-131)||(43215183-43215290)
chr7 (18-103)||(7744082-7744167)
[»] chr1 (9 HSPs)
chr1 (18-103)||(2799883-2799968)
chr1 (18-103)||(8177152-8177237)
chr1 (18-82)||(8904456-8904520)
chr1 (18-101)||(15786291-15786373)
chr1 (18-103)||(33700743-33700828)
chr1 (18-89)||(40810502-40810573)
chr1 (47-85)||(23398979-23399017)
chr1 (18-68)||(32524387-32524437)
chr1 (269-318)||(17511349-17511398)
[»] chr4 (10 HSPs)
chr4 (18-103)||(4249198-4249283)
chr4 (18-81)||(44194954-44195017)
chr4 (243-356)||(596416-596529)
chr4 (18-103)||(37109321-37109406)
chr4 (18-103)||(38869789-38869874)
chr4 (22-80)||(20770955-20771013)
chr4 (18-69)||(33632106-33632157)
chr4 (32-102)||(7949438-7949508)
chr4 (46-103)||(20608943-20609000)
chr4 (31-103)||(8030187-8030259)
[»] chr5 (7 HSPs)
chr5 (18-95)||(37258336-37258413)
chr5 (29-101)||(5156106-5156179)
chr5 (18-83)||(25627098-25627162)
chr5 (19-83)||(14285202-14285266)
chr5 (31-103)||(43442217-43442289)
chr5 (29-96)||(2331969-2332035)
chr5 (32-100)||(31074256-31074324)
[»] chr3 (13 HSPs)
chr3 (18-103)||(30311327-30311412)
chr3 (46-96)||(33464491-33464541)
chr3 (18-103)||(15048031-15048116)
chr3 (18-103)||(46518649-46518734)
chr3 (32-96)||(4252509-4252572)
chr3 (16-56)||(27259229-27259269)
chr3 (30-77)||(7902698-7902745)
chr3 (276-327)||(49250276-49250327)
chr3 (18-103)||(4222162-4222247)
chr3 (30-83)||(27093343-27093396)
chr3 (18-95)||(28703374-28703451)
chr3 (18-83)||(53412986-53413051)
chr3 (32-96)||(44069786-44069850)
[»] chr2 (11 HSPs)
chr2 (18-85)||(45026782-45026849)
chr2 (18-83)||(11062401-11062465)
chr2 (31-130)||(1435064-1435156)
chr2 (18-82)||(4060184-4060248)
chr2 (18-103)||(14500298-14500383)
chr2 (18-103)||(30410519-30410604)
chr2 (18-82)||(34041558-34041622)
chr2 (18-96)||(13803523-13803601)
chr2 (32-69)||(11251142-11251179)
chr2 (29-81)||(1156476-1156527)
chr2 (31-103)||(42602575-42602647)
[»] chr8 (5 HSPs)
chr8 (32-130)||(6536514-6536612)
chr8 (32-68)||(36034505-36034541)
chr8 (18-69)||(42740549-42740600)
chr8 (29-103)||(18540319-18540393)
chr8 (31-89)||(43594301-43594359)
[»] scaffold0126 (1 HSPs)
scaffold0126 (30-103)||(25329-25402)
[»] chr6 (9 HSPs)
chr6 (18-103)||(12188273-12188358)
chr6 (46-94)||(6608113-6608161)
chr6 (32-96)||(28841442-28841506)
chr6 (32-71)||(24256806-24256845)
chr6 (32-70)||(10007226-10007264)
chr6 (18-68)||(11306144-11306194)
chr6 (18-103)||(15951272-15951357)
chr6 (18-82)||(3925786-3925850)
chr6 (31-103)||(6776590-6776662)
[»] scaffold0194 (1 HSPs)
scaffold0194 (31-103)||(13029-13101)
[»] scaffold0072 (1 HSPs)
scaffold0072 (46-83)||(16592-16629)
[»] scaffold0299 (1 HSPs)
scaffold0299 (31-103)||(11549-11621)
[»] scaffold0238 (1 HSPs)
scaffold0238 (30-102)||(2693-2765)


Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-153; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 18 - 391
Target Start/End: Original strand, 37162320 - 37162687
Alignment:
Q  18 aaactaactccctcaaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacactcctagatctcaagcctataccagtaccactaaacca 117  Q
    |||||||  ||||||||||| |||||||||||||| |||||| |||||||||||||| |||||||| | |||||||| || |||||      |||  |||    
T  37162320 aaactaatcccctcaaattggcaccagagagaatcgaacttgagaccttgagaagaagcacactcccaaatctcaagtctttacca------ctaggcca 37162413  T
Q  118 acccaagtgggtttacaaaatgaatagttaataaatttcatttttaaatttatcatgacttgccttaacctaaataaaactgatgataattttaaacttt 217  Q
    ||| |||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37162414 accgaagtggatttgcaaaatgaatagttaataaatttcattttaaaatttatcatgacttgccttaacctaaataaaactgatgataattttaaacttt 37162513  T
Q  218 tagtacaagttgattaaatttctaggatttgaagaatatacaccgtcagaagaaaacagttttacactaatatccaatcaaaatccactattttgcaaca 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37162514 tagtacaagttgattaaatttctaggatttgaagaatatacaccgtcagaagaaaacagttttacactaatatccaatcaaaatccactattttgcaaca 37162613  T
Q  318 ttactccactcttgtatgcccagtcagaagttaataatgccatataaaaatacagcattgctttacatcgcgag 391  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  37162614 ttactccactcttgtatgggcagtcagaagttaataatgccatataaaaatacagcattgctatacatcgcgag 37162687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 18363801 - 18363717
Alignment:
Q  18 aaactaactccctcaaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacactcctagatctcaagcctatacca 103  Q
    |||||||| |||||||||||  || |||||||||||||| || ||||||||| || | |||||||| | |||||||||||||||||    
T  18363801 aaactaac-ccctcaaattggtactagagagaatcaaacctgagaccttgaggaggagcacactcccaaatctcaagcctatacca 18363717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 29785271 - 29785356
Alignment:
Q  18 aaactaactccctcaaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacactcctagatctcaagcctatacca 103  Q
    |||||||| ||||||||||| ||||||| |||||| ||| || ||||||||| || | |||||| | ||||| |||||||||||||    
T  29785271 aaactaaccccctcaaattggcaccagaaagaatcgaacatgagaccttgaggaggagcacacttccagatcccaagcctatacca 29785356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 33869418 - 33869498
Alignment:
Q  21 ctaactccctcaaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacactcctagatctcaagcctatac 101  Q
    ||||| |||||||||||||||||||||||||| |||  | |||||||||||| | |||||| | || ||||||||| ||||    
T  33869418 ctaaccccctcaaattgacaccagagagaatcgaaccagagaccttgagaaggagcacacttccaggtctcaagccaatac 33869498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 21570002 - 21570053
Alignment:
Q  18 aaactaactccctcaaattgacaccagagagaatcaaacttgtgaccttgag 69  Q
    |||||||| ||||||||||||||||||||| |||| |||||| |||||||||    
T  21570002 aaactaaccccctcaaattgacaccagagaaaatcgaacttgagaccttgag 21570053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 385 - 420
Target Start/End: Original strand, 37162695 - 37162730
Alignment:
Q  385 tcgcgagtgttatcccgacagcaaaaagcctttgat 420  Q
    ||||||||||||||||||||||||||||||||||||    
T  37162695 tcgcgagtgttatcccgacagcaaaaagcctttgat 37162730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 17113901 - 17113836
Alignment:
Q  18 aaactaactccctcaaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacactcc 83  Q
    |||||||| ||||||||||  || ||||||||||| |||||| ||||||||| |||| ||||||||    
T  17113901 aaactaaccccctcaaattagcatcagagagaatcgaacttgagaccttgaggagaagcacactcc 17113836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 26459380 - 26459465
Alignment:
Q  18 aaactaactccctcaaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacactcctagatctcaagcctatacca 103  Q
    |||||||| || |||||||| |||||||||||||| ||| || ||||||||| || | |||||||| || || |||||| ||||||    
T  26459380 aaactaaccccttcaaattggcaccagagagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaatacca 26459465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 4566412 - 4566463
Alignment:
Q  32 aaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacactcc 83  Q
    |||||| |||||||||||||||||| || |||||||||||| || |||||||    
T  4566412 aaattggcaccagagagaatcaaacctgagaccttgagaaggaatacactcc 4566463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 9608609 - 9608684
Alignment:
Q  28 cctcaaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacactcctagatctcaagcctatacca 103  Q
    |||||||||||||| |||||||||| ||| || || |||||| || |  ||||||| ||||| |||||||||||||    
T  9608609 cctcaaattgacactagagagaatcgaacctgagatcttgaggaggaggacactcccagatcccaagcctatacca 9608684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 9836181 - 9836256
Alignment:
Q  28 cctcaaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacactcctagatctcaagcctatacca 103  Q
    |||||||||||||| |||||||||| ||| || || |||||| || |  ||||||| ||||| |||||||||||||    
T  9836181 cctcaaattgacactagagagaatcgaacctgagatcttgaggaggaggacactcccagatcccaagcctatacca 9836256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 15137646 - 15137583
Alignment:
Q  31 caaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacactcctagatctcaag 94  Q
    |||||||||||||||||||||| ||| || ||||||||| || | |||||||||| ||| ||||    
T  15137646 caaattgacaccagagagaatctaacctgagaccttgaggaggagcacactcctaaatcccaag 15137583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 33222476 - 33222425
Alignment:
Q  18 aaactaactccctcaaattgacaccagagagaatcaaacttgtgaccttgag 69  Q
    |||||||| | |||||||||||||||||||||||| ||| || |||||||||    
T  33222476 aaactaaccctctcaaattgacaccagagagaatcgaacctgagaccttgag 33222425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 29538532 - 29538586
Alignment:
Q  18 aaactaactccctcaaattgacaccagagagaatcaaacttgtgaccttgagaag 72  Q
    |||||||||| ||||||||| || ||| ||||||| |||||| ||||||||||||    
T  29538532 aaactaactcactcaaattggcatcagggagaatcgaacttgagaccttgagaag 29538586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 43215290 - 43215183
Alignment:
Q  18 aaactaactccctcaaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacactcctagatctcaagcctataccagtaccactaaacca 117  Q
    |||||||| ||||||||||| ||  |||||||||| ||| || ||||||||| || | |||||||| || || ||||      ||| |||||||| ||||    
T  43215290 aaactaaccccctcaaattggcataagagagaatcgaacctgagaccttgaggaggagcacactccgaggtcccaag------ccaataccactagacca 43215197  T
Q  118 acccaagtgggttt 131  Q
    ||||||||||||||    
T  43215196 acccaagtgggttt 43215183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 7744082 - 7744167
Alignment:
Q  18 aaactaactccctcaaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacactcctagatctcaagcctatacca 103  Q
    ||||| || ||||||||||  |||||||||||||||||| || ||||||||| || | || | ||| |||||  ||||||||||||    
T  7744082 aaactgaccccctcaaatttgcaccagagagaatcaaacctgagaccttgaggaggagcatagtcccagatcctaagcctatacca 7744167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 2799968 - 2799883
Alignment:
Q  18 aaactaactccctcaaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacactcctagatctcaagcctatacca 103  Q
    |||||||| ||||||||||| |||||||||||||| ||| || ||||||||| || | |||||||| |||||||||||||||||||    
T  2799968 aaactaaccccctcaaattggcaccagagagaatcgaacctgagaccttgaggaggagcacactcccagatctcaagcctatacca 2799883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 8177152 - 8177237
Alignment:
Q  18 aaactaactccctcaaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacactcctagatctcaagcctatacca 103  Q
    |||||||| ||||||||||| |||||||||||||| ||| ||  |||||||| || | |||||||| ||||| |||||| ||||||    
T  8177152 aaactaaccccctcaaattggcaccagagagaatcgaacctgaaaccttgaggaggagcacactcccagatcccaagccaatacca 8177237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 8904520 - 8904456
Alignment:
Q  18 aaactaactccctcaaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacactc 82  Q
    |||||||| ||||||||||| |||||||||||||| |||||| ||||||||| || | |||||||    
T  8904520 aaactaaccccctcaaattggcaccagagagaatcgaacttgagaccttgaggaggagcacactc 8904456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 15786291 - 15786373
Alignment:
Q  18 aaactaactccctcaaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacactcctagatctcaagcctatac 101  Q
    |||||||| ||||||||||||||||| |||||||| ||| || ||||||||| || | |||||||| ||||| |||||| ||||    
T  15786291 aaactaac-ccctcaaattgacaccaaagagaatcgaacctgagaccttgaggaggagcacactcccagatcccaagccaatac 15786373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 33700743 - 33700828
Alignment:
Q  18 aaactaactccctcaaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacactcctagatctcaagcctatacca 103  Q
    |||||||| |||| |||||| |||||||||||||| ||| || ||||||||| || | |||||||| ||||  |||||| ||||||    
T  33700743 aaactaacccccttaaattggcaccagagagaatcgaacctgagaccttgaggaggagcacactcccagattccaagccaatacca 33700828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 40810573 - 40810502
Alignment:
Q  18 aaactaactccctcaaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacactcctagatc 89  Q
    |||||||| | ||||||||| |||||||||||||| ||| || ||||||||  || |||||||||| |||||    
T  40810573 aaactaaccctctcaaattggcaccagagagaatcgaacctgagaccttgaagaggaacacactcccagatc 40810502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 85
Target Start/End: Complemental strand, 23399017 - 23398979
Alignment:
Q  47 agaatcaaacttgtgaccttgagaagaaacacactccta 85  Q
    |||||| |||||| |||||||||||||||||||||||||    
T  23399017 agaatcgaacttgagaccttgagaagaaacacactccta 23398979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 32524437 - 32524387
Alignment:
Q  18 aaactaactccctcaaattgacaccagagagaatcaaacttgtgaccttga 68  Q
    |||||||| ||||||||||| |||||||||||||| |||||| || |||||    
T  32524437 aaactaaccccctcaaattggcaccagagagaatcgaacttgagatcttga 32524387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 318
Target Start/End: Original strand, 17511349 - 17511398
Alignment:
Q  269 gaaaacagttttacactaatatccaatcaaaatccactattttgcaacat 318  Q
    ||||||||||||||||| | ||||||| ||||||||||| ||||| ||||    
T  17511349 gaaaacagttttacactgacatccaatgaaaatccactactttgccacat 17511398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 4249283 - 4249198
Alignment:
Q  18 aaactaactccctcaaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacactcctagatctcaagcctatacca 103  Q
    |||||||| ||||||||||| |||||||||||||||||| || ||||||||| || | |||||||| | ||| |||||||||||||    
T  4249283 aaactaaccccctcaaattggcaccagagagaatcaaacctgagaccttgaggaggagcacactccaaaatcccaagcctatacca 4249198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 44194954 - 44195017
Alignment:
Q  18 aaactaactccctcaaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacact 81  Q
    |||||||||||||||||||| |||||||||||||  ||| || |||||||||||||||||||||    
T  44194954 aaactaactccctcaaattggcaccagagagaattgaacatgagaccttgagaagaaacacact 44195017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 243 - 356
Target Start/End: Original strand, 596416 - 596529
Alignment:
Q  243 gatttgaagaatatacaccgtcagaagaaaacagttttacactaatatccaatcaaaatccactattttgcaacattactccactcttgtatgcccagtc 342  Q
    ||||| |||||||| ||||||||    ||| |||||||||||||| || ||||||||||| |||||||||| |||| || |||||||||||||   |||     
T  596416 gatttaaagaatatccaccgtcaattaaaaccagttttacactaacattcaatcaaaatcaactattttgccacataaccccactcttgtatgggtagtt 596515  T
Q  343 agaagttaataatg 356  Q
    | ||||||||||||    
T  596516 acaagttaataatg 596529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 37109321 - 37109406
Alignment:
Q  18 aaactaactccctcaaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacactcctagatctcaagcctatacca 103  Q
    |||||||| ||||||||||| |||||||||||||| ||| || ||||||||| || | |||||||| || || |||||| ||||||    
T  37109321 aaactaaccccctcaaattggcaccagagagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaatacca 37109406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 38869874 - 38869789
Alignment:
Q  18 aaactaactccctcaaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacactcctagatctcaagcctatacca 103  Q
    |||||||| ||||||||||| |||||||| ||||| ||| || ||||||||| || | |||||||| ||||| |||||| ||||||    
T  38869874 aaactaaccccctcaaattggcaccagagggaatcgaacctgagaccttgaggaggagcacactcccagatcccaagccaatacca 38869789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 20771013 - 20770955
Alignment:
Q  22 taactccctcaaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacac 80  Q
    |||| ||||||||||| |||| ||||||||| |||||| |||||||||||| |||||||    
T  20771013 taaccccctcaaattggcacctgagagaatcgaacttgagaccttgagaaggaacacac 20770955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 33632106 - 33632157
Alignment:
Q  18 aaactaactccctcaaattgacaccagagagaatcaaacttgtgaccttgag 69  Q
    |||||||| |||||||||||||||||||||||||| | | || |||||||||    
T  33632106 aaactaaccccctcaaattgacaccagagagaatcgatcctgggaccttgag 33632157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 102
Target Start/End: Original strand, 7949438 - 7949508
Alignment:
Q  32 aaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacactcctagatctcaagcctatacc 102  Q
    ||||||||||||||||||||| ||| || ||||||||| || | |||||||| || || |||||| |||||    
T  7949438 aaattgacaccagagagaatcgaacctgagaccttgaggaggagcacactccgaggtcccaagccaatacc 7949508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 103
Target Start/End: Complemental strand, 20609000 - 20608943
Alignment:
Q  46 gagaatcaaacttgtgaccttgagaagaaacacactcctagatctcaagcctatacca 103  Q
    ||||||| |||||| ||||||||  |||||||||||||  ||||||||||| ||||||    
T  20609000 gagaatcgaacttgagaccttgatgagaaacacactcccggatctcaagccaatacca 20608943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 103
Target Start/End: Original strand, 8030187 - 8030259
Alignment:
Q  31 caaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacactcctagatctcaagcctatacca 103  Q
    ||||||||||| |||| ||||| |||||| ||||||||| || | |||||||| |  || |||||||||||||    
T  8030187 caaattgacactagagggaatcgaacttgagaccttgaggaggagcacactcccaagtcccaagcctatacca 8030259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 37258336 - 37258413
Alignment:
Q  18 aaactaactccctcaaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacactcctagatctcaagc 95  Q
    |||||||| |||||||||||||||||||||||||| ||| ||  |||||||| || | |||||||||||||| |||||    
T  37258336 aaactaaccccctcaaattgacaccagagagaatcgaacctgaaaccttgaggaggagcacactcctagatcccaagc 37258413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 101
Target Start/End: Original strand, 5156106 - 5156179
Alignment:
Q  29 ctcaaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacact-cctagatctcaagcctatac 101  Q
    |||||||||||||||||||||||| ||  || |||||| ||||||| |||||| || ||||||||| |||||||    
T  5156106 ctcaaattgacaccagagagaatcgaatctgagaccttcagaagaagcacactccccagatctcaatcctatac 5156179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 25627162 - 25627098
Alignment:
Q  18 aaactaactccctcaaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacactcc 83  Q
    |||||||| |||||||||||||||||||||||||| ||| || ||||||||| || | ||||||||    
T  25627162 aaactaac-ccctcaaattgacaccagagagaatcgaacctgagaccttgaggaggagcacactcc 25627098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 14285266 - 14285202
Alignment:
Q  19 aactaactccctcaaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacactcc 83  Q
    ||||||| ||||||||||| |||||||||||||| ||| || ||||||||| || | ||||||||    
T  14285266 aactaaccccctcaaattggcaccagagagaatcgaacctgagaccttgaggaggagcacactcc 14285202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 103
Target Start/End: Complemental strand, 43442289 - 43442217
Alignment:
Q  31 caaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacactcctagatctcaagcctatacca 103  Q
    |||||||||| ||||||||||| ||| || ||||||||| || | |||||||| ||||||||| || ||||||    
T  43442289 caaattgacaacagagagaatcgaacctgagaccttgaggaggagcacactcccagatctcaaaccaatacca 43442217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 2331969 - 2332035
Alignment:
Q  29 ctcaaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacactcctagatctcaagcc 96  Q
    ||||||||||||  || ||||||||||| || ||||||||||| ||||||||||| ||||| ||||||    
T  2331969 ctcaaattgacat-agggagaatcaaacatgagaccttgagaaaaaacacactccaagatcccaagcc 2332035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 100
Target Start/End: Complemental strand, 31074324 - 31074256
Alignment:
Q  32 aaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacactcctagatctcaagcctata 100  Q
    |||||| |||||||||||||| ||| || || |||||| || |||||||||| | ||| ||||||||||    
T  31074324 aaattggcaccagagagaatcgaacctgagatcttgaggaggaacacactccaaaatcccaagcctata 31074256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 30311412 - 30311327
Alignment:
Q  18 aaactaactccctcaaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacactcctagatctcaagcctatacca 103  Q
    |||||||| ||||||||||| ||||| |||||||| ||| || ||||||||| || | |||||||| ||||| |||||||||||||    
T  30311412 aaactaaccccctcaaattggcaccaaagagaatcgaacctgagaccttgaggaggagcacactcccagatcccaagcctatacca 30311327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 46 - 96
Target Start/End: Complemental strand, 33464541 - 33464491
Alignment:
Q  46 gagaatcaaacttgtgaccttgagaagaaacacactcctagatctcaagcc 96  Q
    ||||||||||| || ||||||||||||||||||||||| ||||||||||||    
T  33464541 gagaatcaaacatgagaccttgagaagaaacacactccaagatctcaagcc 33464491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 15048031 - 15048116
Alignment:
Q  18 aaactaactccctcaaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacactcctagatctcaagcctatacca 103  Q
    |||||||| ||||||||||| ||||||||| |||| ||| || ||||||||| || | |||| ||| ||||| |||||||||||||    
T  15048031 aaactaaccccctcaaattggcaccagagataatcgaacctgagaccttgaggaggagcacattcccagatcccaagcctatacca 15048116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 46518734 - 46518649
Alignment:
Q  18 aaactaactccctcaaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacactcctagatctcaagcctatacca 103  Q
    |||||||| ||||||||||| || ||||||||||||||| ||  |||||||| || | |||||||| ||||| |||||| ||||||    
T  46518734 aaactaaccccctcaaattggcatcagagagaatcaaacctgaaaccttgaggaggagcacactcccagatcccaagccaatacca 46518649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 96
Target Start/End: Original strand, 4252509 - 4252572
Alignment:
Q  32 aaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacactcctagatctcaagcc 96  Q
    |||||| |||||||| |||||||||||| ||||||||| || | |||||||| ||||||||||||    
T  4252509 aaattggcaccagagggaatcaaacttgagaccttgag-aggagcacactccaagatctcaagcc 4252572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 27259269 - 27259229
Alignment:
Q  16 caaaactaactccctcaaattgacaccagagagaatcaaac 56  Q
    |||||||||| |||||||||||||| |||||||||||||||    
T  27259269 caaaactaaccccctcaaattgacatcagagagaatcaaac 27259229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 7902698 - 7902745
Alignment:
Q  30 tcaaattgacaccagagagaatcaaacttgtgaccttgagaagaaaca 77  Q
    ||||||||||||| ||||||||||||| || |||||||||||| ||||    
T  7902698 tcaaattgacacctgagagaatcaaacatgagaccttgagaaggaaca 7902745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 327
Target Start/End: Complemental strand, 49250327 - 49250276
Alignment:
Q  276 gttttacactaatatccaatcaaaatccactattttgcaacattactccact 327  Q
    |||||||| ||| ||||||| |||||||||||||||||||||| || |||||    
T  49250327 gttttacattaacatccaatgaaaatccactattttgcaacatcaccccact 49250276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 4222247 - 4222162
Alignment:
Q  18 aaactaactccctcaaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacactcctagatctcaagcctatacca 103  Q
    |||||||||| |  ||||||||||||||||||||| ||| |  ||| ||||| || | |||||||| ||||| |||||| ||||||    
T  4222247 aaactaactcacctaaattgacaccagagagaatcgaacctaagactttgaggaggagcacactcccagatcccaagccaatacca 4222162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 27093343 - 27093396
Alignment:
Q  30 tcaaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacactcc 83  Q
    |||||||| |||||||||||||||||| || ||||||||| || | ||||||||    
T  27093343 tcaaattggcaccagagagaatcaaacctgagaccttgaggaggagcacactcc 27093396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 28703374 - 28703451
Alignment:
Q  18 aaactaactccctcaaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacactcctagatctcaagc 95  Q
    ||||||||  |||||||||| |||||||||||||| ||| || ||||||||  || | |||||||| ||||| |||||    
T  28703374 aaactaacctcctcaaattggcaccagagagaatcgaacctgagaccttgaagaggagcacactcccagatcccaagc 28703451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 53413051 - 53412986
Alignment:
Q  18 aaactaactccctcaaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacactcc 83  Q
    |||||||| ||||||||||| |||||||||||||  ||| || ||||||||| || | ||||||||    
T  53413051 aaactaaccccctcaaattggcaccagagagaattgaacctgagaccttgaggaggagcacactcc 53412986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 44069850 - 44069786
Alignment:
Q  32 aaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacactcctagatctcaagcc 96  Q
    |||||| |||| || |||||||||| || ||||||||| || | |||||||| ||||||||||||    
T  44069850 aaattggcaccggaaagaatcaaacctgagaccttgaggaggagcacactccaagatctcaagcc 44069786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 45026849 - 45026782
Alignment:
Q  18 aaactaactccctcaaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacactccta 85  Q
    |||||||| ||||||||||| |||||||||||||||||| || ||||||||| || | ||||||||||    
T  45026849 aaactaaccccctcaaattggcaccagagagaatcaaacatgagaccttgaggaggagcacactccta 45026782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 11062465 - 11062401
Alignment:
Q  18 aaactaactccctcaaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacactcc 83  Q
    ||||||||||| |||||||||||| |||||||||||||| || ||||||||| |||| ||||||||    
T  11062465 aaactaactcc-tcaaattgacacaagagagaatcaaacctgagaccttgaggagaagcacactcc 11062401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 31 - 130
Target Start/End: Complemental strand, 1435156 - 1435064
Alignment:
Q  31 caaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacactcctagatctcaagcctataccagtaccactaaaccaacccaagtgggtt 130  Q
    |||||||||||||||||||||| ||| || ||||||||| |||| |||||||||| ||| ||||      ||||||||||||  ||||||||||||||||    
T  1435156 caaattgacaccagagagaatcgaac-tgagaccttgaggagaagcacactcctaaatcccaag------ccagtaccactatgccaacccaagtgggtt 1435064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 4060184 - 4060248
Alignment:
Q  18 aaactaactccctcaaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacactc 82  Q
    |||||||| |||||||||||||||||||||||||| ||| || || |||||| |||| |||||||    
T  4060184 aaactaaccccctcaaattgacaccagagagaatcgaacctgagatcttgaggagaagcacactc 4060248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 14500383 - 14500298
Alignment:
Q  18 aaactaactccctcaaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacactcctagatctcaagcctatacca 103  Q
    |||||| | ||||||||||| |||||||||||||| ||  || ||||| ||| || | |||||||| ||||||||||| |||||||    
T  14500383 aaactatccccctcaaattggcaccagagagaatcgaatctgagacctagaggaggagcacactcccagatctcaagcttatacca 14500298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 30410519 - 30410604
Alignment:
Q  18 aaactaactccctcaaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacactcctagatctcaagcctatacca 103  Q
    |||||||| ||||||||||| ||||||||| |||| ||| || | ||||||| || | ||||||||||| || |||||| ||||||    
T  30410519 aaactaaccccctcaaattggcaccagagaaaatcgaacatgagtccttgaggaggagcacactcctaggtcccaagccaatacca 30410604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 34041558 - 34041622
Alignment:
Q  18 aaactaactccctcaaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacactc 82  Q
    |||||||| ||||||||||| |||||||| ||||||||| || ||||||||| || | |||||||    
T  34041558 aaactaaccccctcaaattggcaccagagggaatcaaacctgagaccttgaggaggagcacactc 34041622  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 13803601 - 13803523
Alignment:
Q  18 aaactaactccctcaaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacactcctagatctcaagcc 96  Q
    |||||||| ||||||||||| || |||||| |||| ||| || ||||||||| || | ||||||||||  |||||||||    
T  13803601 aaactaaccccctcaaattggcatcagagataatcgaacctgagaccttgaggaggagcacactcctaagtctcaagcc 13803523  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 69
Target Start/End: Complemental strand, 11251179 - 11251142
Alignment:
Q  32 aaattgacaccagagagaatcaaacttgtgaccttgag 69  Q
    ||||||||||||||||||||||||| || |||||||||    
T  11251179 aaattgacaccagagagaatcaaacctgagaccttgag 11251142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 1156527 - 1156476
Alignment:
Q  29 ctcaaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacact 81  Q
    ||||||||||||  || ||||||||||| || |||||||||||||||||||||    
T  1156527 ctcaaattgacat-agggagaatcaaacatgagaccttgagaagaaacacact 1156476  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 103
Target Start/End: Complemental strand, 42602647 - 42602575
Alignment:
Q  31 caaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacactcctagatctcaagcctatacca 103  Q
    ||||||| |||| ||||||||||||| |  |||||||||||| | |||||||| || || |||||| ||||||    
T  42602647 caaattggcaccggagagaatcaaacctaagaccttgagaaggagcacactcccaggtcccaagccaatacca 42602575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 32 - 130
Target Start/End: Complemental strand, 6536612 - 6536514
Alignment:
Q  32 aaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacactcctagatctcaagcctataccagtaccactaaaccaacccaagtgggtt 130  Q
    |||||| |||||||||||||  ||| || ||||||||| || | ||||||||||| || |||||| |||||| ||||||||  |||||| |||||||||    
T  6536612 aaattggcaccagagagaattgaacctgagaccttgaggaggagcacactcctaggtcccaagccaataccactaccactaggccaacctaagtgggtt 6536514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 36034505 - 36034541
Alignment:
Q  32 aaattgacaccagagagaatcaaacttgtgaccttga 68  Q
    |||||||||||||||||||||||||||| ||||||||    
T  36034505 aaattgacaccagagagaatcaaacttgagaccttga 36034541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 42740600 - 42740549
Alignment:
Q  18 aaactaactccctcaaattgacaccagagagaatcaaacttgtgaccttgag 69  Q
    ||||||||||||| ||||||||||||||||||||  ||| || |||||||||    
T  42740600 aaactaactcccttaaattgacaccagagagaattgaacctgagaccttgag 42740549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 103
Target Start/End: Complemental strand, 18540393 - 18540319
Alignment:
Q  29 ctcaaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacactcctagatctcaagcctatacca 103  Q
    ||||||||| |||||||||||||| ||| || ||||||||| ||||  ||||||| || || |||||| ||||||    
T  18540393 ctcaaattggcaccagagagaatcgaacctgagaccttgaggagaagtacactcccaggtcccaagccaatacca 18540319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 89
Target Start/End: Original strand, 43594301 - 43594359
Alignment:
Q  31 caaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacactcctagatc 89  Q
    ||||||||||| |||||||||| ||| || ||||||||| || |||||| |||||||||    
T  43594301 caaattgacactagagagaatcgaacctgagaccttgaggaggaacacattcctagatc 43594359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 30 - 103
Target Start/End: Original strand, 25329 - 25402
Alignment:
Q  30 tcaaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacactcctagatctcaagcctatacca 103  Q
    |||||||||||||||||| |||| ||| || |||||||||||| | |||||||| |  ||||||||| ||||||    
T  25329 tcaaattgacaccagagataatcgaacctgagaccttgagaaggagcacactcccaagtctcaagccaatacca 25402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 12188273 - 12188358
Alignment:
Q  18 aaactaactccctcaaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacactcctagatctcaagcctatacca 103  Q
    |||||||| ||||||||||| ||| |||||||||| ||||||  |||||||| || | |||||||| || || |||||| ||||||    
T  12188273 aaactaaccccctcaaattggcactagagagaatcgaacttgaaaccttgaggaggagcacactcccaggtcccaagccaatacca 12188358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 94
Target Start/End: Original strand, 6608113 - 6608161
Alignment:
Q  46 gagaatcaaacttgtgaccttgagaagaaacacactcctagatctcaag 94  Q
    ||||||||||| || ||| ||||||||||||||||||| ||||||||||    
T  6608113 gagaatcaaacatgagacattgagaagaaacacactccaagatctcaag 6608161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 28841506 - 28841442
Alignment:
Q  32 aaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacactcctagatctcaagcc 96  Q
    ||||||||||| ||||||||| |||||| ||||||||| || | ||||||||| | |||||||||    
T  28841506 aaattgacaccggagagaatcgaacttgagaccttgaggaggagcacactccttggtctcaagcc 28841442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 71
Target Start/End: Original strand, 24256806 - 24256845
Alignment:
Q  32 aaattgacaccagagagaatcaaacttgtgaccttgagaa 71  Q
    ||||||||||||||||||||| |||||| |||||||||||    
T  24256806 aaattgacaccagagagaatcgaacttgagaccttgagaa 24256845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 70
Target Start/End: Complemental strand, 10007264 - 10007226
Alignment:
Q  32 aaattgacaccagagagaatcaaacttgtgaccttgaga 70  Q
    |||||||||||||||| ||||||||||| ||||||||||    
T  10007264 aaattgacaccagagataatcaaacttgagaccttgaga 10007226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 11306144 - 11306194
Alignment:
Q  18 aaactaactccctcaaattgacaccagagagaatcaaacttgtgaccttga 68  Q
    |||||||| ||||||||||| |||||||||||||| ||| || ||||||||    
T  11306144 aaactaaccccctcaaattggcaccagagagaatcgaacctgagaccttga 11306194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 15951272 - 15951357
Alignment:
Q  18 aaactaactccctcaaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacactcctagatctcaagcctatacca 103  Q
    |||||||| | |||||||||  ||||||||||||  ||| || ||||||||| || | |||||||| | ||||||||| |||||||    
T  15951272 aaactaaccctctcaaattggtaccagagagaattgaacatgagaccttgaggaggagcacactcccaaatctcaagcttatacca 15951357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 3925850 - 3925786
Alignment:
Q  18 aaactaactccctcaaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacactc 82  Q
    |||||||| |||||||||||| ||||||||||||  ||  || ||| |||||||| |||||||||    
T  3925850 aaactaaccccctcaaattgataccagagagaattgaatctgagactttgagaaggaacacactc 3925786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 103
Target Start/End: Original strand, 6776590 - 6776662
Alignment:
Q  31 caaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacactcctagatctcaagcctatacca 103  Q
    |||||||| |||||||||||||||||||| ||| | ||| || | ||||| || ||||| |||||| ||||||    
T  6776590 caaattgaaaccagagagaatcaaacttgagacatcgaggaggagcacacccccagatcccaagccaatacca 6776662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 103
Target Start/End: Original strand, 13029 - 13101
Alignment:
Q  31 caaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacactcctagatctcaagcctatacca 103  Q
    |||||||||| | ||||||||| ||| || ||||||||| || | |||||||| |||||||||||| ||||||    
T  13029 caaattgacatcggagagaatcgaacctgagaccttgaggaggagcacactcccagatctcaagccaatacca 13101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 83
Target Start/End: Complemental strand, 16629 - 16592
Alignment:
Q  46 gagaatcaaacttgtgaccttgagaagaaacacactcc 83  Q
    ||||||||||| || |||||||||||||||||||||||    
T  16629 gagaatcaaacatgagaccttgagaagaaacacactcc 16592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 103
Target Start/End: Complemental strand, 11621 - 11549
Alignment:
Q  31 caaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacactcctagatctcaagcctatacca 103  Q
    |||||| ||||||||||||||| ||| || ||||| ||| || | |||||||| ||||| |||||| ||||||    
T  11621 caaattaacaccagagagaatcgaacctgagacctcgaggaggagcacactcccagatcccaagccaatacca 11549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 102
Target Start/End: Original strand, 2693 - 2765
Alignment:
Q  30 tcaaattgacaccagagagaatcaaacttgtgaccttgagaagaaacacactcctagatctcaagcctatacc 102  Q
    |||||||| |||||||||||||| ||| || ||||||||| || | || |||||||  |||||||| ||||||    
T  2693 tcaaattggcaccagagagaatcgaacctgagaccttgaggaggagcagactcctaattctcaagcatatacc 2765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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