View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11662_high_1 (Length: 676)
Name: NF11662_high_1
Description: NF11662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11662_high_1 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 620; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 620; E-Value: 0
Query Start/End: Original strand, 1 - 658
Target Start/End: Original strand, 38275200 - 38275849
Alignment:
| Q |
1 |
aacaagggaatttgatgaaataaaagagaaccgaaaactataaccacatcatccattcttccttgaatcatctcagacatctcaattctaaaagcatgac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38275200 |
aacaagggaatttgatgaaataaaagagaaccgaaaactataaccacatcatccattcttccttgaatcatctcagacatctcaattctaaaagcatgac |
38275299 |
T |
|
| Q |
101 |
agtgaacacacaaaatacattgacacctagagacgtggataacaaacatcttaccgactgttgagaaaataaatatatctttgataacgaaaggggggaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38275300 |
agtgaacacacaaaatacattgacacctagagacgtggataacaaacatcttaccgactgttgagaaaataaatatatctttgataacgaaaggggggaa |
38275399 |
T |
|
| Q |
201 |
aatgcataaaaattataaggataaggaaaaactcaccagctagaaattagagttatgaaatcaacaatttagttcgaaagataggagagcctttggcgat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38275400 |
aatgcataaaaattataaggataaggaaaaactcaccagctagaaattagagttatgaaatcaacaatttagttcgaaagataggagagcctttggcgat |
38275499 |
T |
|
| Q |
301 |
aaataagaaattgaatattctgcaatgtgatcacaggtttcacatataaaagaccccatacaagtgcagatgcagatcttgaagtaattttatccctttc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
38275500 |
aaataagaaattgaatattctgcaatgtgatcacaggtttcacatataaaagaccccatacaag------tgcagatcttgaagtaattttatccctttc |
38275593 |
T |
|
| Q |
401 |
tcatcacagtaacgctgaaaaagttcccttgtatcttgcagtgccttcgacttgaaaaacatacggtgtgaagattaatactaacaaagttttgtttaca |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38275594 |
tcatcacagtaacgctgaaaaagttcccttgtatcttgcagtgccttcgacttgaaaaacatacggtgtgaagattaatactaacaaagttttgtttaca |
38275693 |
T |
|
| Q |
501 |
ttaaaagagttaaaaggtaatattactgcaggaaatttcgttcaagtaaaggaaatggcagcaaaatactcaggaattcctgtggaataatttccgcagg |
600 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38275694 |
ttaaaagagttaaaaggtaatattactgcaggaaatttcgttcaa--aaaggaaatggcagcaaaatactcaggaattcctgtggaataatttccgcagg |
38275791 |
T |
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| Q |
601 |
aaaaacgtgagtttctagtagtgtaaatactttttagattcattggtaactgtgggat |
658 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38275792 |
aaaaacgtgagtttctagtagtgtaaataatttttagattcattggtaactgtgggat |
38275849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 51 - 157
Target Start/End: Original strand, 36870449 - 36870555
Alignment:
| Q |
51 |
atccattcttccttgaatcatctcagacatctcaattctaaaagcatgacagtgaacacacaaaatacattgacacctagagacgtggataacaaacatc |
150 |
Q |
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||||||||||||||| ||||||||||| |||||| ||||||||||| |||| |||||| |||| |||||||||||||||||||| | |||||||||| |
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| T |
36870449 |
atccattcttccttgcatcatctcagaattctcaaatctaaaagcataacagagaacacttgaaatgcattgacacctagagacgtgaagaacaaacatc |
36870548 |
T |
|
| Q |
151 |
ttaccga |
157 |
Q |
| |
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||||||| |
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| T |
36870549 |
ttaccga |
36870555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 526 - 578
Target Start/End: Original strand, 32235839 - 32235891
Alignment:
| Q |
526 |
ctgcaggaaatttcgttcaagtaaaggaaatggcagcaaaatactcaggaatt |
578 |
Q |
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| T |
32235839 |
ctgcaggaaatttcgttagagtaaagaaaatggcagcaaaatcctcaggaatt |
32235891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 514 - 603
Target Start/End: Original strand, 11753599 - 11753688
Alignment:
| Q |
514 |
aaggtaatatta-ctgcaggaaatttcgttcaagtaaaggaaatggcagcaaaatactcaggaattcctgtggaataatttccgcaggaaa |
603 |
Q |
| |
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|||| ||||||| ||||||||||||||||||| ||||| ||||||| |||||||| |||||||||||||| ||||||| |||||| ||||| |
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| T |
11753599 |
aaggaaatattatctgcaggaaatttcgttca-gtaaaagaaatggtagcaaaatcctcaggaattcctgcggaataacttccgctggaaa |
11753688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 532 - 597
Target Start/End: Complemental strand, 11815464 - 11815399
Alignment:
| Q |
532 |
gaaatttcgttcaagtaaaggaaatggcagcaaaatactcaggaattcctgtggaataatttccgc |
597 |
Q |
| |
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||||||| ||||||||||| |||||| ||| ||||| |||||||||||||| |||||||||||||| |
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| T |
11815464 |
gaaattttgttcaagtaaaagaaatgacagtaaaatcctcaggaattcctgcggaataatttccgc |
11815399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 381 - 446
Target Start/End: Original strand, 8964798 - 8964863
Alignment:
| Q |
381 |
gaagtaattttatccctttctcatcacagtaacgctgaaaaagttcccttgtatcttgcagtgcct |
446 |
Q |
| |
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|||||||||| |||| |||||||||| |||||| ||||||||||||| |||| |||||| |||||| |
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| T |
8964798 |
gaagtaatttcatccttttctcatcagagtaacactgaaaaagttcctttgtctcttgcggtgcct |
8964863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 211 - 272
Target Start/End: Complemental strand, 37962416 - 37962355
Alignment:
| Q |
211 |
aattataaggataaggaaaaactcaccagctagaaattagagttatgaaatcaacaatttag |
272 |
Q |
| |
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||||| |||||||||| |||||||||||||||| |||||||||||| || ||||||||||| |
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| T |
37962416 |
aattaaaaggataaggtaaaactcaccagctagcaattagagttatcaatccaacaatttag |
37962355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 562 - 603
Target Start/End: Original strand, 36087009 - 36087050
Alignment:
| Q |
562 |
caaaatactcaggaattcctgtggaataatttccgcaggaaa |
603 |
Q |
| |
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|||||| |||||| ||||||||||| |||||||||||||||| |
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| T |
36087009 |
caaaatcctcaggcattcctgtggattaatttccgcaggaaa |
36087050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 211 - 274
Target Start/End: Complemental strand, 20455 - 20392
Alignment:
| Q |
211 |
aattataaggataaggaaaaactcaccagctagaaattagagttatgaaatcaacaatttagtt |
274 |
Q |
| |
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||||| ||||||||| |||||||||||||||| ||||||||||||||| |||||||| |||| |
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| T |
20455 |
aattaaaaggataagataaaactcaccagctagcaattagagttatgaatccaacaattcagtt |
20392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 211 - 274
Target Start/End: Complemental strand, 16430473 - 16430410
Alignment:
| Q |
211 |
aattataaggataaggaaaaactcaccagctagaaattagagttatgaaatcaacaatttagtt |
274 |
Q |
| |
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||||| ||||||||| |||||||||||||||| ||||||||||||||| |||||||| |||| |
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|
| T |
16430473 |
aattaaaaggataagataaaactcaccagctagcaattagagttatgaatccaacaattcagtt |
16430410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 526 - 587
Target Start/End: Original strand, 39917081 - 39917142
Alignment:
| Q |
526 |
ctgcaggaaatttcgttcaagtaaaggaaatggcagcaaaatactcaggaattcctgtggaa |
587 |
Q |
| |
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||||||||||||||||||||| |||||||||| ||| ||||| || |||| |||||| |||| |
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|
| T |
39917081 |
ctgcaggaaatttcgttcaagcaaaggaaatgacagtaaaatccttaggacttcctgcggaa |
39917142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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