View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11662_high_3 (Length: 457)
Name: NF11662_high_3
Description: NF11662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11662_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 16 - 445
Target Start/End: Complemental strand, 28226586 - 28226157
Alignment:
| Q |
16 |
aaagacagcaaaattttactcttatgctacagtaattgttaaatgttgtcaagttcaatatttaatatcaatgacacttatgaactgcaaatttttattc |
115 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28226586 |
aaagacaacaaaattttactcttatgctacagtaattgttaaatgttgtcaagttcaatatttaatatcaatgacacttatgaactgcaaatttttattc |
28226487 |
T |
|
| Q |
116 |
acagtgatcgcctcagaccaaaatatatgacacaaatatgagtgtggctgtggagaacttgaaaaagaatatacgtcattataagaaaatgcagatttca |
215 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28226486 |
acagtgatggcctcagaccaaaatatatgacacaaatatgagtgtggctgtggaaaacttgaaaaagaatatacgtcattataagaaaatgcagatttca |
28226387 |
T |
|
| Q |
216 |
gaaaggcaagagttcactaggaatgggaaaagaagttatttatgcatctgctcttttcgatttcttatgattctttagaatatgatgcatatgaaaatga |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28226386 |
gaaaggcaagagttcactaggaatgggaaaagaagttatttatgcatctgctcttttcgatttcttatgattctttagaatatgatgcatatgaaaatga |
28226287 |
T |
|
| Q |
316 |
atggaaaaagggcatgtgaaattcacctcaagatagatatcaatggctttgtagaccccatcaaagcaatcccttgcagaatcaggcaaacattctgcaa |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28226286 |
atggaaaaagggcatgtgaaattcacctcaagatagatatcaatggctttgtagaccccatcaaagcaatcccttgcagaatcaggcaaacattctgcaa |
28226187 |
T |
|
| Q |
416 |
ctccaagaaatttagagatctttaggttct |
445 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
28226186 |
ctccaagaaatttagagatctttaggttct |
28226157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 336 - 445
Target Start/End: Original strand, 13040378 - 13040487
Alignment:
| Q |
336 |
attcacctcaagatagatatcaatggctttgtagaccccatcaaagcaatcccttgcagaatcaggcaaacattctgcaactccaagaaatttagagatc |
435 |
Q |
| |
|
|||||||||||| ||||| ||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||| ||||| | || |||||||||||| |
|
|
| T |
13040378 |
attcacctcaaggtagatgtcaatggctctatagaccccatcaaagcaatcccttgcaaaatcaggcaaacattctacaacttctaggaatttagagatc |
13040477 |
T |
|
| Q |
436 |
tttaggttct |
445 |
Q |
| |
|
| ||||||| |
|
|
| T |
13040478 |
tcaaggttct |
13040487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University