View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11662_low_2 (Length: 543)
Name: NF11662_low_2
Description: NF11662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11662_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 124; Significance: 2e-63; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 336 - 532
Target Start/End: Complemental strand, 31935777 - 31935569
Alignment:
| Q |
336 |
ttaaaaatgagttcagttgagatgcttgataaaataatcatattgtcacgtaaatctacactgtaactttttnnnnnnnntaatatactcaactcttata |
435 |
Q |
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| T |
31935777 |
ttaaaaatgagttcagttgagatgcttgataaaataatcatattgtcacgtaaatctacactgtaacttttttaaaaaaataatatactcaactcttata |
31935678 |
T |
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| Q |
436 |
gatgtggaaattattatttaccaaatattgtc------------atgcaagcaaaaagagtgatatttatcaattgtgattggtatatatggttagatct |
523 |
Q |
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| T |
31935677 |
gatgtggaaaatattatttaccaaatattttccttcaacattgaatgcaagcaaaaagagtgatatttatcaattgtgattggtatatatggttaaacct |
31935578 |
T |
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| Q |
524 |
tctattcat |
532 |
Q |
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|||| |||| |
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| T |
31935577 |
tctactcat |
31935569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 105 - 232
Target Start/End: Complemental strand, 31936045 - 31935918
Alignment:
| Q |
105 |
acaaccgcatgttcgaatagcgacaggtggagaatacatggcaggttctcaataagaatcaagatgtttcttcatatggcatgcattgagaaaaagagtg |
204 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31936045 |
acaaccgcatgttcaaatagcgacaggtggagaatacatggcaagttctcaataagaatcaagatgtttcttcatatggcatgcattgagaaaaagagtg |
31935946 |
T |
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| Q |
205 |
attcgttgatacaatatagtatagtatc |
232 |
Q |
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| T |
31935945 |
attcgttgatacaatatagtatcgtatc |
31935918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 31936105 - 31936044
Alignment:
| Q |
19 |
aaggtgcgtgacattgatacggtgagagttatattcattgcattgcaagcggttaaggacac |
80 |
Q |
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| T |
31936105 |
aaggtgcgtgacattgatacggtgagagttatattcattgcattgcaagcggttaaggacac |
31936044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 185 - 232
Target Start/End: Complemental strand, 31932884 - 31932837
Alignment:
| Q |
185 |
atgcattgagaaaaagagtgattcgttgatacaatatagtatagtatc |
232 |
Q |
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| T |
31932884 |
atgcattgagaaagagagtgattcattgatacaatatagtatagtatc |
31932837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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