View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11662_low_4 (Length: 419)
Name: NF11662_low_4
Description: NF11662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11662_low_4 |
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| [»] scaffold0638 (1 HSPs) |
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| [»] scaffold0451 (1 HSPs) |
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| [»] scaffold0022 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 17 - 402
Target Start/End: Complemental strand, 38263439 - 38263070
Alignment:
| Q |
17 |
agatttcaaagcatataccattgtatagaaaaactattcttctatcgatagaaacataatttcaaactatgaaaaggagaatannnnnnnacaagtctta |
116 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||| |||||||||| |
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| T |
38263439 |
agatttcaaagcatataccattatatagaaaaactattcttttatcgatag----------------tatgaaaaggagaatatttttttacaagtctta |
38263356 |
T |
|
| Q |
117 |
ttcaaacacatatatcaatgccaactagaaaggcgataagtgggaatggcagttaaatgatttgccctaggcatagtaagtacaaactcctctgtcatat |
216 |
Q |
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||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
38263355 |
ttcaaacacatatatcaatatcaaccagaaaggcgataagtgggaatggcagttaaatgatttgccctaggcatagtaagtccaaactcctctgtcatat |
38263256 |
T |
|
| Q |
217 |
ccaaatcacttggtaacatatgattaggcaatttccaatcaaagcaatgcacaagttgagccaccaccaaacgaatcacagttaggcctaattgcaatcc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38263255 |
ccaaatcacttggtaacatatgattaggcaatttccaatcaaagcaatgcacaagttgagccaccaccaaacgaatcacagttaggcctaattgcaatcc |
38263156 |
T |
|
| Q |
317 |
aggacaaccccttctaccagacccaaatggtatgagctgaaaatcacgtcctctaacatctatattgctttcttcaaatctctctg |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38263155 |
aggacaaccccttctaccagacccaaatggtatgagctgaaaatcacgtcctctaacatctatattgctttcttcaaatctctctg |
38263070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 145 - 402
Target Start/End: Complemental strand, 38260356 - 38260099
Alignment:
| Q |
145 |
aaaggcgataagtgggaatggcagttaaatgatttgccctaggcatagtaagtacaaactcctctgtcatatccaaatcacttggtaacatatgattagg |
244 |
Q |
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|||| ||||||| || |||||| ||| || ||| || |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
38260356 |
aaagacgataagcagggatggcaattagattattggctctaggcatagtaagaccaaaatcctctgtcatatccaaatcacttggtaacatatgattagg |
38260257 |
T |
|
| Q |
245 |
caatttccaatcaaagcaatgcacaagttgagccaccaccaaacgaatcacagttaggcctaattgcaatccaggacaaccccttctaccagacccaaat |
344 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||| || |||||| |
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| T |
38260256 |
caatttccaatcaaagcaatgcacaagttgagccaccaccaaacgaatcacagttagacctaattgtaatccaggacaacctcttctacctgagccaaat |
38260157 |
T |
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| Q |
345 |
ggtatgagctgaaaatcacgtcctctaacatctatattgctttcttcaaatctctctg |
402 |
Q |
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|||||||||||||||||||||||| |||||||||||||| || ||||||| ||||||| |
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| T |
38260156 |
ggtatgagctgaaaatcacgtcctttaacatctatattgtttccttcaaacctctctg |
38260099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 171 - 400
Target Start/End: Complemental strand, 27413677 - 27413448
Alignment:
| Q |
171 |
aaatgatttgccctaggcatagtaagtacaaactcctctgtcatatccaaatcacttggtaacatatgattaggcaatttccaatcaaagcaatgcacaa |
270 |
Q |
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|||||||| || ||||||||||||| |||| |||| ||||| |||||||||||||||||||||| |||||| |||||| |||||||||||||||||| |
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| T |
27413677 |
aaatgattggctctaggcatagtaataccaaatgcctcagtcatgtccaaatcacttggtaacatatcattaggtaatttcaaatcaaagcaatgcacaa |
27413578 |
T |
|
| Q |
271 |
gttgagccaccaccaaacgaatcacagttaggcctaattgcaatccaggacaaccccttctaccagacccaaatggtatgagctgaaaatcacgtcctct |
370 |
Q |
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||| |||||||||||||| | || |||||| || || ||||||||||||||||||||||| ||||| ||||||||||| |||||||| ||| |||||| |
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| T |
27413577 |
tttgggccaccaccaaacgcaccatagttagacccaaatgcaatccaggacaaccccttcttccagagccaaatggtataagctgaaagtcatgtcctcc |
27413478 |
T |
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| Q |
371 |
aacatctatattgctttcttcaaatctctc |
400 |
Q |
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||||||||| ||| || ||||||||||||| |
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| T |
27413477 |
aacatctatgttgtttccttcaaatctctc |
27413448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0638 (Bit Score: 108; Significance: 4e-54; HSPs: 1)
Name: scaffold0638
Description:
Target: scaffold0638; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 205 - 400
Target Start/End: Complemental strand, 7088 - 6893
Alignment:
| Q |
205 |
cctctgtcatatccaaatcacttggtaacatatgattaggcaatttccaatcaaagcaatgcacaagttgagccaccaccaaacgaatcacagttaggcc |
304 |
Q |
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|||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||| | || |||||| || |
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| T |
7088 |
cctctgccatgtccaaatcacttggtaacatatgattaggcaatttaaaatcaaagcaatgcacaagttgggctaccaccaaacgcaccatagttagacc |
6989 |
T |
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| Q |
305 |
taattgcaatccaggacaaccccttctaccagacccaaatggtatgagctgaaaatcacgtcctctaacatctatattgctttcttcaaatctctc |
400 |
Q |
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||||||||||||||||| |||||||| ||||| | ||||||||| || ||||||||| |||||| ||||||||| ||| || ||||||||||||| |
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| T |
6988 |
caattgcaatccaggacatccccttcttccagagctaaatggtataagttgaaaatcatgtcctccaacatctatgttgtttccttcaaatctctc |
6893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0451 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0451
Description:
Target: scaffold0451; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 207 - 400
Target Start/End: Original strand, 6795 - 6988
Alignment:
| Q |
207 |
tctgtcatatccaaatcacttggtaacatatgattaggcaatttccaatcaaagcaatgcacaagttgagccaccaccaaacgaatcacagttaggccta |
306 |
Q |
| |
|
|||||||| ||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||| || ||| ||||||| | || |||||| |||| |
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| T |
6795 |
tctgtcatgtccaagtcacttggtaacatatcattaggcaatttaaaatcaaagcaatgcacaagttgggctaccgccaaacgcaccatagttagaccta |
6894 |
T |
|
| Q |
307 |
attgcaatccaggacaaccccttctaccagacccaaatggtatgagctgaaaatcacgtcctctaacatctatattgctttcttcaaatctctc |
400 |
Q |
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|||||||||||||||| |||||||| ||||| ||||||||||| || ||||| | | |||| ||||||||| ||| || ||||||||||||| |
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| T |
6895 |
attgcaatccaggacatccccttcttccagagccaaatggtataagatgaaagtgttgccctccaacatctatgttgtttccttcaaatctctc |
6988 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 368
Target Start/End: Original strand, 91184 - 91238
Alignment:
| Q |
314 |
tccaggacaaccccttctaccagacccaaatggtatgagctgaaaatcacgtcct |
368 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||| | |||||||||| ||||| |
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|
| T |
91184 |
tccaggacaaccccttctaccagcaccaaaaggtatcaactgaaaatcatgtcct |
91238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 402
Target Start/End: Complemental strand, 31890781 - 31890693
Alignment:
| Q |
314 |
tccaggacaaccccttctaccagacccaaatggtatgagctgaaaatcacgtcctctaacatctatattgctttcttcaaatctctctg |
402 |
Q |
| |
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||||||||||| |||| |||| | |||||||||||||| ||||||||| |||| | || |||| || || |||||||||||||||| |
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| T |
31890781 |
tccaggacaacttcttcgaccaaaaccaaatggtatgagttgaaaatcatgtccacgaatgtctacatcactatcttcaaatctctctg |
31890693 |
T |
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