View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11662_low_5 (Length: 404)

Name: NF11662_low_5
Description: NF11662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11662_low_5
NF11662_low_5
[»] chr5 (10 HSPs)
chr5 (18-390)||(1162354-1162726)
chr5 (156-292)||(1850468-1850604)
chr5 (35-132)||(39400885-39400982)
chr5 (75-382)||(40412480-40412778)
chr5 (134-211)||(40419467-40419544)
chr5 (296-355)||(1850781-1850840)
chr5 (242-382)||(39880558-39880689)
chr5 (18-100)||(40419378-40419460)
chr5 (88-281)||(38988459-38988658)
chr5 (344-390)||(40419663-40419709)
[»] chr4 (2 HSPs)
chr4 (137-257)||(25911041-25911161)
chr4 (18-89)||(25911177-25911248)
[»] chr8 (1 HSPs)
chr8 (156-246)||(34401891-34401981)


Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 18 - 390
Target Start/End: Complemental strand, 1162726 - 1162354
Alignment:
Q  18 atcaaggtattgactactttttctgtagtcaacgtcatgctcaaaagcagtttgtgcattttataaaggaactagttcctggccgcgaagaatctcttta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1162726 atcaaggtattgactactttttctgtagtcaacgtcatgctcaaaagcagtttgtgcattttataaaggaactagttcctggccgcgaagaatctcttta 1162627  T
Q  118 agataagcaacttgtttttctcatgatacatttgtctgtcaattatgagattgctgaatttgctgattgcatttatacgacattttgagatgttcagtta 217  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1162626 agataaacaacttgtttttctcatgatacatttgtctgtcaattatgagattgctgaatttgctgattgcatttatacgacattttgagatgttcagtta 1162527  T
Q  218 tatcattataggctactcaagttgttacaacacgagcttgaaaattattgtctcaaaccccttctcaatctctctatgcaatcctgtctcaaagccttag 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  1162526 tatcattataggctactcaagttgttacaacacgagcttgaaaattattgtctcaaaccccttctcaatctctctatacaatcctgtctcaaagccttag 1162427  T
Q  318 ggatgcagattttgcagcaaaactggctggtttatacaactcttgcaatcaaacatggctagttttacttctt 390  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1162426 ggatgcagattttgcagcaaaactggctggtttatacaactcttgcaatcaaacatggctagttttacttctt 1162354  T

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Target: chr5; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 156 - 292
Target Start/End: Original strand, 1850468 - 1850604
Alignment:
Q  156 tcaattatgagattgctgaatttgctgattgcatttatacgacattttgagatgttcagttatatcattataggctactcaagttgttacaacacgagct 255  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1850468 tcaattatgagattgctgaatttgctgattgcatttagatgacattttgagatgttcagttatatcattataggctactcaagttgttacaacacgagct 1850567  T
Q  256 tgaaaattattgtctcaaaccccttctcaatctctct 292  Q
    |||||||||||||||||||||||||| ||||||||||    
T  1850568 tgaaaattattgtctcaaaccccttcgcaatctctct 1850604  T

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Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 35 - 132
Target Start/End: Original strand, 39400885 - 39400982
Alignment:
Q  35 tttttctgtagtcaacgtcatgctcaaaagcagtttgtgcattttataaaggaactagttcctggccgcgaagaatctctttaagataagcaacttgt 132  Q
    ||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||| || |||||||| |||||||||| ||||||||    
T  39400885 tttttctgtagtcaaagtcatgctcaaaagtagtttgtgtattttataaaggaactagttcctggctgcaaagaatctttttaagataaccaacttgt 39400982  T

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Target: chr5; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 75 - 382
Target Start/End: Original strand, 40412480 - 40412778
Alignment:
Q  75 attttataaaggaactagttcctggccgcgaagaatctcttt--aagataagcaacttg-tttttctcatgatacatttgtctgtcaattatgagattgc 171  Q
    ||||||||||||||||||||||||||  | ||||||||||||  ||||||||||||||| |||||||  |||||||||||||  ||||||||||||        
T  40412480 attttataaaggaactagttcctggctactaagaatctctttaaaagataagcaacttgttttttcttgtgatacatttgtccatcaattatgaga---- 40412575  T
Q  172 tgaatttgctgattgcatttatacgacattttgagatgttcagtt------atatcattataggctactcaagttg-------ttacaacacgagcttga 258  Q
         ||||||||| || ||||| || ||| |||| |||||||||      |||||||||||||||| | ||||||       |||||||| ||||||||    
T  40412576 -----ttgctgattacaattatatgatattctgaggtgttcagttatatcaatatcattataggctattgaagttgttgcaacttacaacatgagcttga 40412670  T
Q  259 aaattattgtctcaaaccccttctcaatctctctatgcaatcctgtctcaaagccttagggatgcagattttgcagcaaaactggctggtttatacaact 358  Q
    |||||||||||| ||||||| |||||     | ||   ||     ||||||||||||||||||| ||||||||||||||||    |||||||||||||||    
T  40412671 aaattattgtcttaaacccc-tctca---ggttta---aa-----tctcaaagccttagggatgtagattttgcagcaaaa----ctggtttatacaact 40412754  T

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Target: chr5; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 134 - 211
Target Start/End: Original strand, 40419467 - 40419544
Alignment:
Q  134 tttctcatgatacatttgtctgtcaattatgagattgctgaatttgctgattgcatttatacgacattttgagatgtt 211  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  40419467 tttctcatgatacatttgtccatcaattatgagattgctgaatttgctgattgcaattatacgacattttgaggtgtt 40419544  T

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Target: chr5; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 296 - 355
Target Start/End: Original strand, 1850781 - 1850840
Alignment:
Q  296 caatcctgtctcaaagccttagggatgcagattttgcagcaaaactggctggtttataca 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1850781 caatcctgtctcaaagccttagggatgcagattttgcagcaaaactggctggtttataca 1850840  T

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Target: chr5; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 242 - 382
Target Start/End: Original strand, 39880558 - 39880689
Alignment:
Q  242 ttacaacacgagcttgaaaattattgtctcaaaccccttctcaatctctctatgcaatcctgtctcaaagccttagggatgcagattttgcagcaaaact 341  Q
    |||||||| |||||||||||||||||||| |||||||||| |||||||    |  ||||     ||||||||||||||||| ||||||||||||||||      
T  39880558 ttacaacatgagcttgaaaattattgtcttaaaccccttcacaatctcaggtttaaatc-----tcaaagccttagggatgtagattttgcagcaaaa-- 39880650  T
Q  342 ggctggtttatacaactcttgcaatcaaacatggctagttt 382  Q
      ||||||||||||||||||||| |||||||||||||||||    
T  39880651 --ctggtttatacaactcttgcattcaaacatggctagttt 39880689  T

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Target: chr5; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 40419378 - 40419460
Alignment:
Q  18 atcaaggtattgactactttttctgtagtcaacgtcatgctcaaaagcagtttgtgcattttataaaggaactagttcctggc 100  Q
    ||||||||||||||| ||||||||||||| || |||||||||||||| |||||||||||| ||||||||||||||||| ||||    
T  40419378 atcaaggtattgacttctttttctgtagttaaagtcatgctcaaaagtagtttgtgcattgtataaaggaactagttcttggc 40419460  T

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Target: chr5; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 88 - 281
Target Start/End: Original strand, 38988459 - 38988658
Alignment:
Q  88 actagttcctggccgcgaagaatctctttaa--gataagcaacttgtttttctcatgatacatttgtctgtcaattatgagattgctgaatttgctgatt 185  Q
    |||||||||||||  ||||||||||||||||  ||||||||||||||||||||  |||||||||||||  ||||||||||||          ||||||||    
T  38988459 actagttcctggctacgaagaatctctttaaaagataagcaacttgtttttcttgtgatacatttgtccatcaattatgaga---------atgctgatt 38988549  T
Q  186 gcatttatacgacattttgagatgttcagtt------atatcattataggctactcaagttg-------ttacaacacgagcttgaaaattattgtctca 272  Q
    ||| ||||| |||||| |||| |||||||||      |||||||||||||||| | ||||||       |||||||| ||||||||| |||||||||| |    
T  38988550 gcaattatatgacattatgaggtgttcagttatatcaatatcattataggctattgaagttgttacaacttacaacatgagcttgaacattattgtctta 38988649  T

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Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 344 - 390
Target Start/End: Original strand, 40419663 - 40419709
Alignment:
Q  344 ctggtttatacaactcttgcaatcaaacatggctagttttacttctt 390  Q
    |||||||||| |||||||||| ||||| |||||||||||||||||||    
T  40419663 ctggtttatataactcttgcactcaaatatggctagttttacttctt 40419709  T

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Target: chr4 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 137 - 257
Target Start/End: Complemental strand, 25911161 - 25911041
Alignment:
Q  137 ctcatgatacatttgtctgtcaattatgagattgctgaatttgctgattgcatttatacgacattttgagatgttcagttatatcattataggctactca 236  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||| || |||||||| ||||||||||||| ||||||||||||| |    
T  25911161 ctcatgatacatttgtccatcaattatgagattgctgaatttgctgattgcaattatatgatattttgaggtgttcagttatattattataggctactga 25911062  T
Q  237 agttgttacaacacgagcttg 257  Q
    |||||||||| || |||||||    
T  25911061 agttgttacaccatgagcttg 25911041  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 25911248 - 25911177
Alignment:
Q  18 atcaaggtattgactactttttctgtagtcaacgtcatgctcaaaagcagtttgtgcattttataaaggaac 89  Q
    |||||||| |||||| ||||||||||||  || |||||||||||||| | ||||||||||||||||||||||    
T  25911248 atcaaggttttgacttctttttctgtagataaagtcatgctcaaaagtaatttgtgcattttataaaggaac 25911177  T

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Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 156 - 246
Target Start/End: Original strand, 34401891 - 34401981
Alignment:
Q  156 tcaattatgagattgctgaatttgctgattgcatttatacgacattttgagatgttcagttatatcattataggctactcaagttgttaca 246  Q
    ||||||||||||| | |||| ||||||||| || ||||| |||||||||||  |||||||||||| ||||||||||||| |||||||||||    
T  34401891 tcaattatgagatgggtgaaattgctgatttcaattatatgacattttgaggagttcagttatattattataggctactgaagttgttaca 34401981  T

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