View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11662_low_6 (Length: 356)
Name: NF11662_low_6
Description: NF11662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11662_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 19 - 345
Target Start/End: Complemental strand, 6857829 - 6857503
Alignment:
| Q |
19 |
ctccaacctccccgcactgcacaacccctcaatcatcgtcatatacgtaattaaatccggacaaatcccattcaaactcatgtccttcatcaacttctca |
118 |
Q |
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| T |
6857829 |
ctccaacctccccgcactgcacaacccctcaatcatcgtcatatacgtaattaaatccggacaaatcccattcaaactcatgtccttcatcaacttctca |
6857730 |
T |
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| Q |
119 |
cccatttcaacatcacccttcttacaaaccaatttaataacaacattatacattaccgtatccggtttcatctcaaaatcctccattttcctcaacaccc |
218 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6857729 |
cccatttcaacatcaccctgcttacaaaccaatttaataacaacattatacattaccgtatccggtttcatctcaaaatcctccattttcctcaacaccc |
6857630 |
T |
|
| Q |
219 |
acaaacccaaatcaacattctcagcttccttacacaatttcaaaacctccctaaacatgttaacattaacaacacacccatcaacctcataagcctcaat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
6857629 |
acaaacccaaatcaacattctcagcttccttacacaatttcaaaacctccctaaacatgttaacattaacaacacacccatcaacctcataagccttaat |
6857530 |
T |
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| Q |
319 |
cacatcacaaataatatccggattctt |
345 |
Q |
| |
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||||||||||||||| ||||||||||| |
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| T |
6857529 |
cacatcacaaataatctccggattctt |
6857503 |
T |
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