View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11662_low_7 (Length: 297)
Name: NF11662_low_7
Description: NF11662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11662_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 8846275 - 8846023
Alignment:
| Q |
1 |
gacttcatggttcagacgatatggattttgaaaccaaatgggaaggaattcgtttcaaaaaaggagctcaaacaaaaagaaaccattcaatttgtttgac |
100 |
Q |
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| T |
8846275 |
gacttcatggttcagacgatatggattttgaaaccaaatgggaaggaattcgtttcaaaaaaggagctcaaacaaaaagaaaccattcaatttgtttgac |
8846176 |
T |
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| Q |
101 |
aaacagaagtcatgttcaagaaggtggcagaatgttaaatgttgatgcaaagaaagaaataattgacacttacatgaagaatttggatagtctttgggct |
200 |
Q |
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| T |
8846175 |
aaacagaagtcatgttcaagaaggtggcagaacgttaaatgttgatgcaaagaaggaaataattgacacttacatgaagaatttggatagtcttcgggct |
8846076 |
T |
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| Q |
201 |
gaagaagagccaactattgacgaagaaacaaacaagttggaggaagaaaaagt |
253 |
Q |
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| T |
8846075 |
gaagaagagccaactattgacgaagaaacaaacaagttggaggaagaaaaagt |
8846023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 4 - 252
Target Start/End: Original strand, 8821587 - 8821850
Alignment:
| Q |
4 |
ttcatggttcagacgatatggattttgaaaccaaatgggaaggaattcgtttcaaaaaaggagctcaaacaaaaagaaaccattcaatttgtttgacaaa |
103 |
Q |
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| T |
8821587 |
ttcatggttaagatgatatgaattttgaaaccaaataagaagggattcatttcaaaaaaggagatcaaataaaaagatatcattcaatttggttgtcaaa |
8821686 |
T |
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| Q |
104 |
cagaagtcatgttcaagaag---------------gtggcagaatgttaaatgttgatgcaaagaaagaaataattgacacttacatgaagaatttggat |
188 |
Q |
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| T |
8821687 |
caaaagtcatgttcaagaagaacaagataataaaggtgacataacgttaaaaattcatgcacataaggaaataattgacacttacatgaagaatttggat |
8821786 |
T |
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| Q |
189 |
agtctttgggctgaagaagagccaactattgacgaagaaacaaacaagttggaggaagaaaaag |
252 |
Q |
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| T |
8821787 |
agtttttcgactgaagaagagccaactattaatgaagaaacaaacaagttggaggaagaaaaag |
8821850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 121 - 251
Target Start/End: Complemental strand, 8820060 - 8819930
Alignment:
| Q |
121 |
aaggtggcagaatgttaaatgttgatgcaaagaaagaaataattgacacttacatgaagaatttggatagtctttgggctgaagaagagccaactattga |
220 |
Q |
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| T |
8820060 |
aaggtgacagaacgttaaatgttgatgcacataaggaaataattgacacttacatgaagaatttggatagtcttccagctgaagaagagccaactattaa |
8819961 |
T |
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| Q |
221 |
cgaagaaacaaacaagttggaggaagaaaaa |
251 |
Q |
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| T |
8819960 |
ggaagaaacaaacaagttggaggaagaaaaa |
8819930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 8820178 - 8820121
Alignment:
| Q |
5 |
tcatggttcagacgatatggattttgaaaccaaatgggaaggaattcgtttcaaaaaa |
62 |
Q |
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| T |
8820178 |
tcatggttcagaggacatggattttaaaaccaaatgggaagggattcatttcaaaaaa |
8820121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 32251911 - 32251806
Alignment:
| Q |
18 |
gatatggattttgaaaccaaatgggaaggaattcgtttcaaaaaaggagctcaaacaaaaagaaaccattcaatttgtttgacaaacagaagtcatgttc |
117 |
Q |
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||||||||||||||||||||||||||||| || | ||||||||| ||||||| |||| ||| ||||| | || |||| | |||||||||||||||| |
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| T |
32251911 |
gatatggattttgaaaccaaatgggaagggatacatttcaaaaagggagctccaacagaaaattttcattcgagttatttgtctaacagaagtcatgttc |
32251812 |
T |
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| Q |
118 |
aagaag |
123 |
Q |
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| T |
32251811 |
atgaag |
32251806 |
T |
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