View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11663_high_6 (Length: 283)
Name: NF11663_high_6
Description: NF11663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11663_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 26 - 128
Target Start/End: Complemental strand, 25093548 - 25093448
Alignment:
| Q |
26 |
agttaacttctaataaatggctaaagactgtgtgtatctcaaatatactttttgaatatgacatcttatatttccatgatcaagtatgaattttcttggc |
125 |
Q |
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|||||| |||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| | |
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| T |
25093548 |
agttaaattctaataaatggccaaagactgtgttt--ctcaaatatactttttgaatatgacatcttatatttccatgatcatgtatgaatattcttgtc |
25093451 |
T |
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| Q |
126 |
tcg |
128 |
Q |
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||| |
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| T |
25093450 |
tcg |
25093448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 26 - 128
Target Start/End: Complemental strand, 25151518 - 25151418
Alignment:
| Q |
26 |
agttaacttctaataaatggctaaagactgtgtgtatctcaaatatactttttgaatatgacatcttatatttccatgatcaagtatgaattttcttggc |
125 |
Q |
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|||||| |||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| | |
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| T |
25151518 |
agttaaattctaataaatggccaaagactgtgttt--ctcaaatatactttttgaatatgacatcttatatttccatgatcatgtatgaatattcttgtc |
25151421 |
T |
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| Q |
126 |
tcg |
128 |
Q |
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||| |
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| T |
25151420 |
tcg |
25151418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 143 - 215
Target Start/End: Complemental strand, 25093383 - 25093313
Alignment:
| Q |
143 |
gaccgatacttacaacttgagcacattgatgtacgtgttgcgctgtgagactcctcaaagtatgacactgaaa |
215 |
Q |
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| T |
25093383 |
gaccgatacttgccacttgagcacattgatgtacgtgttgtgc--tgagactcctcaaagtatgacactgaaa |
25093313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 143 - 215
Target Start/End: Complemental strand, 25151353 - 25151283
Alignment:
| Q |
143 |
gaccgatacttacaacttgagcacattgatgtacgtgttgcgctgtgagactcctcaaagtatgacactgaaa |
215 |
Q |
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||||||||||| | |||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
25151353 |
gaccgatacttgccacttgagcacattgatgtacgtgttgtgc--tgagactcctcaaagtatgacactgaaa |
25151283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 214 - 273
Target Start/End: Complemental strand, 25093213 - 25093154
Alignment:
| Q |
214 |
aataaggctcttctcctgttacttggagattaaaggttcaaattttgaaatattttcttc |
273 |
Q |
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|||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
25093213 |
aataaggcccttctcctgttacttggagattaaaggttaaaattttgaagtattttcttc |
25093154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 214 - 273
Target Start/End: Complemental strand, 25151183 - 25151124
Alignment:
| Q |
214 |
aataaggctcttctcctgttacttggagattaaaggttcaaattttgaaatattttcttc |
273 |
Q |
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|||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
25151183 |
aataaggcccttctcctgttacttggagattaaaggttaaaattttgaagtattttcttc |
25151124 |
T |
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