View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11663_high_7 (Length: 240)

Name: NF11663_high_7
Description: NF11663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11663_high_7
NF11663_high_7
[»] chr3 (9 HSPs)
chr3 (1-222)||(34376011-34376232)
chr3 (92-213)||(34467723-34467844)
chr3 (94-186)||(34477696-34477788)
chr3 (94-173)||(34462643-34462722)
chr3 (95-213)||(34372741-34372859)
chr3 (92-186)||(34473755-34473849)
chr3 (159-213)||(27625894-27625948)
chr3 (159-213)||(34511667-34511721)
chr3 (111-182)||(27616650-27616721)
[»] chr2 (2 HSPs)
chr2 (36-186)||(10533296-10533446)
chr2 (82-213)||(10526460-10526591)
[»] scaffold1215 (1 HSPs)
scaffold1215 (82-213)||(454-585)


Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 34376011 - 34376232
Alignment:
Q  1 atgtatatgttccaagttctagtgattcttttttaagatgaagataccattagccgtgcctccgacctcacccttgctaaggacattgcccttggaaaaa 100  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  34376011 atgtatatgttccaagttctagtgatctttttttaagatgaagataccattagccgtgcctccgacctcacccttgctaaggacatttcccttggaaaaa 34376110  T
Q  101 ggtatgaccatgttcttggatatcttataaatatcaactatactcacgagtgaaaatttctatctgaatttaatatcattgtaactgattcattgttttc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  34376111 ggtatgaccatgttcttggatatcttataaatatcaactatactcatgagtgaaaatttctatcttaatttaatatcattgtaactgattcattgttttc 34376210  T
Q  201 tatatttaataaaccgactctg 222  Q
     |||||||||||||||||||||    
T  34376211 catatttaataaaccgactctg 34376232  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 92 - 213
Target Start/End: Complemental strand, 34467844 - 34467723
Alignment:
Q  92 ttggaaaaaggtatgaccatgttcttggatatcttataaatatcaactatactcacgagtgaaaatttctatctgaatttaatatcattgtaactgattc 191  Q
    ||||| ||| |||||| | ||||||||||||| ||||||||||||||||| |||| ||| ||||||  |||||||||||||||||| |||| ||| ||||    
T  34467844 ttggagaaaagtatgatcctgttcttggatatgttataaatatcaactatgctcatgagggaaaatgcctatctgaatttaatatcgttgttactcattc 34467745  T
Q  192 attgttttctatatttaataaa 213  Q
    |||||| |||| ||||||||||    
T  34467744 attgttctctacatttaataaa 34467723  T

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Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 94 - 186
Target Start/End: Complemental strand, 34477788 - 34477696
Alignment:
Q  94 ggaaaaaggtatgaccatgttcttggatatcttataaatatcaactatactcacgagtgaaaatttctatctgaatttaatatcattgtaact 186  Q
    |||| ||||||||| | | ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||    
T  34477788 ggaataaggtatgatccttttcttggatatgttataaatatcaactatacttacgagtgaaaatttctatctgaatttaataacagtgtaact 34477696  T

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Target: chr3; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 94 - 173
Target Start/End: Complemental strand, 34462722 - 34462643
Alignment:
Q  94 ggaaaaaggtatgaccatgttcttggatatcttataaatatcaactatactcacgagtgaaaatttctatctgaatttaa 173  Q
    ||||||||||||||   ||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||    
T  34462722 ggaaaaaggtatgatgttgttcttggatatgttataaatatcaactatactcacgatagaaaatttctatctgaatttaa 34462643  T

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Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 95 - 213
Target Start/End: Original strand, 34372741 - 34372859
Alignment:
Q  95 gaaaaaggtatgaccatgttcttggatatcttataaatatcaactatactcacgagtgaaaatttctatctgaatttaatatcattgtaactgattcatt 194  Q
    ||||||||||||| | || | |||||||  ||||||||||||| | |||||| |||||||||| |||||||||| |||| |||||||||| | |||||||    
T  34372741 gaaaaaggtatgatcctgcttttggataatttataaatatcaattgtactcatgagtgaaaatgtctatctgaaattaagatcattgtaaattattcatt 34372840  T
Q  195 gttttctatatttaataaa 213  Q
    ||| |||| ||||||||||    
T  34372841 gttctctacatttaataaa 34372859  T

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Target: chr3; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 92 - 186
Target Start/End: Complemental strand, 34473849 - 34473755
Alignment:
Q  92 ttggaaaaaggtatgaccatgttcttggatatcttataaatatcaactatactcacgagtgaaaatttctatctgaatttaatatcattgtaact 186  Q
    |||||||||||||||| | || | || ||||| ||||||||||||| ||| |||| |||| ||||| |||||||||| |||||||||||||||||    
T  34473849 ttggaaaaaggtatgatcctgctatttgatatgttataaatatcaaatatgctcatgagttaaaatgtctatctgaagttaatatcattgtaact 34473755  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 27625948 - 27625894
Alignment:
Q  159 tctatctgaatttaatatcattgtaactgattcattgttttctatatttaataaa 213  Q
    |||||||||||||||| ||||||| ||| |||||||||| |||| ||||||||||    
T  27625948 tctatctgaatttaatgtcattgttactcattcattgttctctacatttaataaa 27625894  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 34511721 - 34511667
Alignment:
Q  159 tctatctgaatttaatatcattgtaactgattcattgttttctatatttaataaa 213  Q
    |||||||||||||||| ||||||| ||| |||||||||| |||| ||||||||||    
T  34511721 tctatctgaatttaatgtcattgttactcattcattgttctctacatttaataaa 34511667  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 182
Target Start/End: Complemental strand, 27616721 - 27616650
Alignment:
Q  111 tgttcttggatatcttataaatatcaactatactcacgagtgaaaatttctatctgaatttaatatcattgt 182  Q
    ||||||| ||||| |||||||||| ||||| |||||  ||||||    ||||||||||||||||||||||||    
T  27616721 tgttcttagatatgttataaatataaactaaactcataagtgaattagtctatctgaatttaatatcattgt 27616650  T

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Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 36 - 186
Target Start/End: Complemental strand, 10533446 - 10533296
Alignment:
Q  36 agatgaagataccattagccgtgcctccgacctcacccttgctaaggacattgcccttggaaaaaggtatgaccatgttcttggatatcttataaatatc 135  Q
    ||||||||||||||| ||   |||||| ||| ||| |  ||| || |||||| || |||||||||||||||| | || | |||||||  |||||||||||    
T  10533446 agatgaagataccatcagtgatgcctcagacatcagcgatgcaaatgacattcccattggaaaaaggtatgatcctgcttttggataagttataaatatc 10533347  T
Q  136 aactatactcacgagtgaaaatttctatctgaatttaatatcattgtaact 186  Q
    |||| ||||||||||||||||| |||||||||| |||||||||||||||||    
T  10533346 aactgtactcacgagtgaaaatgtctatctgaagttaatatcattgtaact 10533296  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 82 - 213
Target Start/End: Complemental strand, 10526591 - 10526460
Alignment:
Q  82 gacattgcccttggaaaaaggtatgaccatgttcttggatatcttataaatatcaactatactcacgagtgaaaatttctatctgaatttaatatcattg 181  Q
    |||||| || |||||||||||||||| | || | || ||||   |||||||||||||| |||||| |||||||||| |||||||||| ||||||| ||||    
T  10526591 gacattcccattggaaaaaggtatgatcctgctttttgataagctataaatatcaactgtactcatgagtgaaaatatctatctgaagttaatattattg 10526492  T
Q  182 taactgattcattgttttctatatttaataaa 213  Q
    ||||| || ||||||| |||  ||||||||||    
T  10526491 taactcatccattgttctctgcatttaataaa 10526460  T

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Target: scaffold1215 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold1215
Description:

Target: scaffold1215; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 82 - 213
Target Start/End: Complemental strand, 585 - 454
Alignment:
Q  82 gacattgcccttggaaaaaggtatgaccatgttcttggatatcttataaatatcaactatactcacgagtgaaaatttctatctgaatttaatatcattg 181  Q
    |||||| || |||||||||||||||| | || | || ||||   |||||||||||||| |||||| |||||||||| |||||||||| ||||||| ||||    
T  585 gacattcccattggaaaaaggtatgatcctgctttttgataagctataaatatcaactgtactcatgagtgaaaatatctatctgaagttaatattattg 486  T
Q  182 taactgattcattgttttctatatttaataaa 213  Q
    ||||| || ||||||| |||  ||||||||||    
T  485 taactcatccattgttctctgcatttaataaa 454  T

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