View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11663_low_1 (Length: 658)
Name: NF11663_low_1
Description: NF11663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11663_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 164 - 650
Target Start/End: Original strand, 13409183 - 13409671
Alignment:
| Q |
164 |
gttaaaaaaccatgcacaatgaatctgtattaacgattcactattcacctcttatcttgtgcaggtgcatatcatttccatattatactgcatgcataaa |
263 |
Q |
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| T |
13409183 |
gttaaaaaaccatgcacaatgaat------taaggattcactattcacctcttatcttgtgcaggtgcatatcatttcaatgttatactgcatgcataaa |
13409276 |
T |
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| Q |
264 |
acatacttcatttttcacannnnnnnncttcaatctaaacattttgtcataattcaataccttatctttccatactaactaaatcaaaacaaactaaatc |
363 |
Q |
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| T |
13409277 |
acatacttcatttttcacattttttttcttcaatctaaacattttgtcataattcaataccttatctttccatactaactaaatcaaaacaaactaaatc |
13409376 |
T |
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| Q |
364 |
aattgttctatattaaactcaacatacaatttaataatcat------tttgaattttactt--gtcttttttattaagctactcataataca---ataat |
452 |
Q |
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| T |
13409377 |
aattgttctatattaaactcaacatacaatttaataataataattattttgaattttacttttgtcttttttattaagctactcataatacatgaataat |
13409476 |
T |
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| Q |
453 |
gttgcaagatcatagtcctccatgcataaccattagaccgtcgttagcaccgacacttctaatcaaaagtatgtctcgtgtttgcctctgagtcacaaca |
552 |
Q |
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| T |
13409477 |
gttgcaagatcatagtcctccatgcataaccattagaccgtcgtaagcaccgacacttctaatcaaaagtatgtcttgtgtttgcctctgagt--caaca |
13409574 |
T |
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| Q |
553 |
ccaacacgtgtaactaagttctattaattcattttttcaaattattatcgaaattgacgtgttcgtatacattattatctcttgtgtccgtgtctgtg |
650 |
Q |
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| T |
13409575 |
ccaacacgtgtaactaagttctattaatttattttttcaaattattatcgatattgatgtgttactat-tattattatctcttgtgtccgtgtctgtg |
13409671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 13409005 - 13409151
Alignment:
| Q |
1 |
tgatcacaaaacattattgtttgcacatattcatcacttggtttatatgtgttgaagcttgatgtttcattgtttttatcgtttgattcttagttttatc |
100 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
13409005 |
tgatcacaaaacattattatttgcacatattcatcacttggtttatatgtgttgaagcttgatgtttcattgttt---------gattcttagttttatc |
13409095 |
T |
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| Q |
101 |
taaagccaaaaatggtgaacaccattattagcattattttaaacttatctagctaa |
156 |
Q |
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| T |
13409096 |
taaagccaaaaatggtgaacaccattattagcattattttaaacttatctagctaa |
13409151 |
T |
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