View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11663_low_3 (Length: 514)
Name: NF11663_low_3
Description: NF11663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11663_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 247 - 500
Target Start/End: Complemental strand, 53474929 - 53474687
Alignment:
| Q |
247 |
ttgagatcaaccaaccactctacaaaataccaaaccaaagccaacaaaatcatgagttgagagccacttcaaaaggttnnnnnnnctgagaataaactga |
346 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || || ||||||| |
|
|
| T |
53474929 |
ttgagatcaaccaaccactctacaaaataccaaaccaaagccaacaaaatcatgaattgagagccacttcaaaaggt----------gaaaa-aaactga |
53474841 |
T |
|
| Q |
347 |
ataagttagacgacataatctgctcccacccaaacacgataaagaccttatacaacaacacttgaagcaataactcacatgttactaagagatggctaca |
446 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53474840 |
ataagttagacgacataatctgctcccacccaaacacgataaagaccttatacaacaacacttgaagcaataactcacatgttactaagagatggctaca |
53474741 |
T |
|
| Q |
447 |
aaggaagcaatttgcatgatcaacctcgacgacaaaggaaaggttgttaccttt |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
53474740 |
aaggaagcaatttgcatgatcaacctcgacgacaaaggaaaggctgttaccttt |
53474687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 53475131 - 53474929
Alignment:
| Q |
11 |
cagagaagtacatggcttaagaaaattcaacctcaagaaggcaatgccatagaccaacattaaccaaaagactatctaaccaaacaaagagagggttt-- |
108 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53475131 |
cagagaagtaaatggcttaagaaaattcaacctcaagaaggcaatgccatagaccaacattaaccaaaagactatctaaccaaacaaagagagggtttta |
53475032 |
T |
|
| Q |
109 |
--tactacccccactcgtagaaagttcaaggagacccataagacttacccgaaaaccattttcaaagatagaaactaacgcgatccactgattgctcaaa |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
53475031 |
cgtactacccccactcgtagaaagttcaaggagacccataagacttactcgaaaaccattttcaaagattgaaactaacgcgatccactaattgctcaaa |
53474932 |
T |
|
| Q |
207 |
att |
209 |
Q |
| |
|
||| |
|
|
| T |
53474931 |
att |
53474929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University