View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11663_low_4 (Length: 494)
Name: NF11663_low_4
Description: NF11663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11663_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 281 - 478
Target Start/End: Original strand, 5257188 - 5257385
Alignment:
| Q |
281 |
taactaaatgaaccaaatgagattcttgagaagctcccttataagcaagagaatatgtacacttatttcctttcctcaaggtgtgtaagaaggacaatta |
380 |
Q |
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| T |
5257188 |
taactaaatgaaccaaatgagattcttgagaagctcccttataagcaagagaatatgtacacttatttcctttcctcaaggtgtgtaagaaggacaattg |
5257287 |
T |
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| Q |
381 |
ccaattgtaaccaaggaatctataaatagcatctactgttggagcacacatgtgagttggaactactcctatagtaactatatcaactgccattaagg |
478 |
Q |
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| T |
5257288 |
ccaattgtaaccaaggaatctataaatagcatctactgttggagcacacatgtgagttggaactactcctatagtaactatatcaactgccattaagg |
5257385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 5256706 - 5256893
Alignment:
| Q |
1 |
taagggatccaagccccttatcaattggaccaatccattgttggttgaatactattaacctttagccgtgattgtgtggttatattttatttattccccc |
100 |
Q |
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| T |
5256706 |
taagggatccaagccccttatcaattggaccaatccattgttggttgaatacgcttaacctttagccgtgattgtgtggttatattttatttattccccc |
5256805 |
T |
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| Q |
101 |
tcaacttatgtactgaacaaacagatgaagagaggaatactgaaatggtggatgaagt-ggtacttatgcattctatggaggatgata |
187 |
Q |
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| T |
5256806 |
tcaacttatgtactgaacaaacagatgaagagaggaatactgaaatggtggatgaagtgggtacttatgcattctatggaggatgata |
5256893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 244 - 288
Target Start/End: Original strand, 5256950 - 5256994
Alignment:
| Q |
244 |
agtctgaacagaaaaaagaaaacacgaaagaatatagtaactaaa |
288 |
Q |
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| T |
5256950 |
agtctgaacagaaaaaagaaaacacgaaagaatatagtaactaaa |
5256994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 43460278 - 43460326
Alignment:
| Q |
1 |
taagggatccaagccccttatcaattggaccaatccattgttggttgaa |
49 |
Q |
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|||||| | |||| |||||| || ||||||||||||||||||||||||| |
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| T |
43460278 |
taaggggttcaagtcccttaccacttggaccaatccattgttggttgaa |
43460326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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