View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11663_low_6 (Length: 297)
Name: NF11663_low_6
Description: NF11663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11663_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 286
Target Start/End: Original strand, 41451432 - 41451705
Alignment:
| Q |
16 |
ataaataccacataaatat--cttatacacaattgcaaaatctcaggttctaatccaaataaaactatctaacctaataatatcatcattgtccactgaa |
113 |
Q |
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| T |
41451432 |
ataaataccacataaatatatcttatacgcaattgcaaaatctcaggttctaatccgaataaaactgtctaacctaataatatcatcattatccacttaa |
41451531 |
T |
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| Q |
114 |
ctaagttttaacaacgataacctctaatgaagtgaatttatgagaacc-aaaaaagatataggatgacatccaatttataaaatttaatctattcaattt |
212 |
Q |
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| T |
41451532 |
ctaagttttaacaacgataacctctaatgaagtgaatttatgagaaccaaaaaaagatttaggatgacatccaatttataaaatttaatctattcaattt |
41451631 |
T |
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| Q |
213 |
cattccgtcatgtacccttaaaatccaagtagtcttttacattctaaagtgttcatttatctattcaatttcat |
286 |
Q |
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| T |
41451632 |
cattccgtcatgtacccttaaaatctaagtagtcttttacattctaaagtgttcatttatctattcaatttcat |
41451705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 269
Target Start/End: Original strand, 41451690 - 41451759
Alignment:
| Q |
200 |
atctattcaatttcattccgtcatgtacccttaaaatccaagtagtcttttacattctaaagtgttcatt |
269 |
Q |
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| T |
41451690 |
atctattcaatttcatttcgtcatgtacccttaaaattcaattagtcaattgccttttaaagtgttcatt |
41451759 |
T |
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