View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11665_high_5 (Length: 367)
Name: NF11665_high_5
Description: NF11665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11665_high_5 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 18 - 367
Target Start/End: Original strand, 32235061 - 32235410
Alignment:
| Q |
18 |
actttctcattgaatgatgagtattccatccaatcaatagcattgcaaagtacatagctcctgtggcnnnnnnnnnnnnnnnnnnnccatatccatatgg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
32235061 |
actttctcattgaatgatgagtattccatccaatcaaaagcattgcaaagtacatagctcctgtggcaaaaacaaaatggaaaaaaccatatccatatgg |
32235160 |
T |
|
| Q |
118 |
aacatcatcttcttctgctggtttatcacccttccttagctgcaaattaatgatatgtgtcagatatgttgtattgcagaaacatgatattaaaattcaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
32235161 |
aacatcatcttcttctgctggtttatcacccttccttagctgcaaattaatgatatgtgtcagatatgttgaattgcagaaacatgatattaaaattcaa |
32235260 |
T |
|
| Q |
218 |
aagtttgattttaatattgaaacaaacctgaaagcatttagaatctatgcctgttgaaaatgttgcaataactattgctagtattccaataacaaaactc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
32235261 |
aagtttgattttaatattgaaacaaacctgaaagcatttagaatctatgcctgttgaaaatgttgcaataactattgctagtattccaataacaaagctc |
32235360 |
T |
|
| Q |
318 |
tgccaacagttattgtcacatgtcagccaacatttcaagacactaatgtt |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32235361 |
tgccaacagttattgtcacatgtcagccaacatttcaagacactaatgtt |
32235410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 242 - 325
Target Start/End: Complemental strand, 43668200 - 43668117
Alignment:
| Q |
242 |
aacctgaaagcatttagaatctatgcctgttgaaaatgttgcaataactattgctagtattccaataacaaaactctgccaaca |
325 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||||| |||||||| ||||| |||||| ||| |||||| ||||||||||| |
|
|
| T |
43668200 |
aacctggaagcatttggaatctatgcctgttgaaaatgtcgcaataacaattgcaagtattgcaacaacaaagctctgccaaca |
43668117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 43668407 - 43668341
Alignment:
| Q |
18 |
actttctcattgaatgatgagtattccatccaatcaatagcattgcaaagtacatagctcctgtggc |
84 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||| ||||||||| ||||| ||||| ||||| ||||| |
|
|
| T |
43668407 |
actttctcatagaatgatgactattccatccaaccaatagcatagcaaaatacattgctcccgtggc |
43668341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University