View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11665_low_1 (Length: 646)
Name: NF11665_low_1
Description: NF11665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11665_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 533; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 1 - 632
Target Start/End: Complemental strand, 29208069 - 29207432
Alignment:
| Q |
1 |
tgtttcttaagcaacaaaacagcttgcatacttcactag----atagtgatacaacctttgttttgaaataagcacaattatatatgtatgaaacaaagt |
96 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
29208069 |
tgtttcttaagcaacaaaacatcttgcatacttcactagctagatagtgatacaacctttgttttgaaataagcacaattatatatgtatgaaacaa-gt |
29207971 |
T |
|
| Q |
97 |
tgcattgccaccttgtgcttttaataacacatatatgtgaaatgataatttacatatataaaaataataaatcagcacaagcacacaaatgtgtgacgaa |
196 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29207970 |
tgcattgtcaccttgtgcttttaataacacatatatgtgaaatgataatttacatatataaaaataataaatcagcacaagcacacaaatgtgtgacgaa |
29207871 |
T |
|
| Q |
197 |
tcataattgacataatataaaagtatatatattttagaaaagcatgcatacgac----atatgtgatatattgaaagtacaactaacctaacaaagttta |
292 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29207870 |
tcataattgacataatataaa-----gtatattttagaaaagcatgcatacgacatatatatgtgatatattgaaagtacaactaacctaacaaagttta |
29207776 |
T |
|
| Q |
293 |
tccatgcaactttctacttgtcatcgtttctttaaatcacaattgcctaaactacacatatctctttaaactttgttaaaagtattatgctacaaatgat |
392 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29207775 |
tccatgcaactttctacttgtcatcatttctttaaatcacaattgcctaaactacacatatctctttaaactttgttaaaagtattatgctacaaatgat |
29207676 |
T |
|
| Q |
393 |
agatatattgaaccactatttggtaagtgttgatttgcttctatatatagaaagacaaattcctattttcaaataattttgaaaaaggtggtcttgatat |
492 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
29207675 |
agatatattgaaccactatttggtaagtgttgatttgcttctatatatagaaagacaaattcctatttataaataattttgaaaaaggtggtcttgatat |
29207576 |
T |
|
| Q |
493 |
gtcatactttagatagttgttataggcatccacacttaattttgcactcaa----atatttcttttaagttggttagacatgatatatattattggacca |
588 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
29207575 |
gtcatactttagatagttgttataggcatccacgcttaattttgcactcaaatatatatttcttttaagttggttagacctgatatatattattggacca |
29207476 |
T |
|
| Q |
589 |
caattatttagatcaagtgcattaccaacaacactatatcacat |
632 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29207475 |
caattatttagatcaagtgcattaccaacaacactatatcacat |
29207432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 161
Target Start/End: Original strand, 38378289 - 38378369
Alignment:
| Q |
79 |
atatgtatgaaacaaagttgcattgccaccttgtgcttttaataacacatatatgtgaaatgataatttacatatataaaaat |
161 |
Q |
| |
|
||||||||| | | ||||||||||||||| |||||| | |||| |||| ||||| |||||||||| |||||| ||||||||| |
|
|
| T |
38378289 |
atatgtatggagcgaagttgcattgccactttgtgcctctaat--cacacatatgagaaatgataagttacatgtataaaaat |
38378369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University