View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11665_low_13 (Length: 244)
Name: NF11665_low_13
Description: NF11665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11665_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 5 - 226
Target Start/End: Original strand, 18642540 - 18642757
Alignment:
| Q |
5 |
ccaacttggttggttaggatgaagggctcatatcctccttgatctagattcaaatgttagacttagcaaaatttaagatttatattaactttgcgtattt |
104 |
Q |
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| T |
18642540 |
ccaacttagttggttaggatgaagggctcatatcctccttgatctagattcaaatgttagacttggcaaaatttaagatttatattaactttgcgtattt |
18642639 |
T |
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| Q |
105 |
tttatttgagagtgacaatgcatatgctttaaatctatagttaattaaaaatgttaagtgaagacaataaaagagtaaacaattcaaactctagtaagat |
204 |
Q |
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| T |
18642640 |
tttattt--tagtgacaatgcatatgctttaaatctatagttaattaaaaatgttaagtgaagacaataaaagagtaaacaattcaaa--ctagtaagat |
18642735 |
T |
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| Q |
205 |
tttgcttaactgatcataacat |
226 |
Q |
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|||||| ||||||||||||||| |
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| T |
18642736 |
tttgctcaactgatcataacat |
18642757 |
T |
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